Mevonlerbart / 5vyf

A4DAB170_5vyf_B_A | Source PDB: 5vyf | Chains: B, A | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.6712
Max Score
1.4659
Min Score
-3.7764
Total Score
-279.23
Score CDR
-0.3972
Score non-CDR
-0.702

Calculation Parameters

Chain Sequence(s) VQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGRGYNADYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKLEYFDYWGQGTLVTVSSASTKGPSVFPLASTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVEDIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTDFTLTISSLRPEDFATYYCQQYNSYPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR input.pdb
Selected Chain(s) B (Heavy), A (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.7764
Maximum Score 1.4659
Average Score -0.6712
Total Score -279.228

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
2 V B 1.0548 Aggregation-prone
3 Q B -0.3127 Soluble
4 L B 0.0000 Buried
5 V B 0.1613 Aggregation-prone
6 E B 0.0000 Buried
7 S B -0.4603 Soluble
8 G B -0.7749 Soluble
9 G B -0.1017 Soluble
11 G B 0.4830 Aggregation-prone
12 L B 0.6450 Aggregation-prone
13 V B 0.0000 Buried
14 Q B -1.5584 Soluble
15 P B -1.6533 Soluble
16 G B -1.3686 Soluble
17 G B -1.0162 Soluble
18 S B -1.1436 Soluble
19 L B -1.0234 Soluble
20 R B -2.0810 Soluble
21 L B 0.0000 Buried
22 S B -0.4901 Soluble
23 C B 0.0000 Buried
24 A B -0.4029 Soluble
25 A B 0.0000 Buried
26 S B -0.3850 Soluble
27 G B 0.0250 Aggregation-prone
28 F B 0.2125 Aggregation-prone
29 T B -0.0032 Soluble
30 F B 0.0000 Buried
35 S B -0.9150 Soluble
36 S B -0.3685 Soluble
37 Y B 0.0764 Aggregation-prone
38 A B -0.3420 Soluble
39 M B 0.0000 Buried
40 S B 0.0000 Buried
41 W B 0.0000 Buried
42 V B 0.0000 Buried
43 R B 0.0000 Buried
44 Q B -0.6730 Soluble
45 A B -1.0253 Soluble
46 P B -0.8391 Soluble
47 G B -1.4781 Soluble
48 K B -2.2819 Soluble
49 G B -1.4455 Soluble
50 L B 0.0000 Buried
51 E B -1.0662 Soluble
52 W B 0.0000 Buried
53 V B 0.0000 Buried
54 S B 0.0000 Buried
55 A B 0.0000 Buried
56 I B 0.0000 Buried
57 S B -0.7795 Soluble
58 G B -0.9716 Soluble
59 R B -1.9756 Soluble
62 G B -1.0386 Soluble
63 Y B 0.0344 Aggregation-prone
64 N B -1.1551 Soluble
65 A B -0.6794 Soluble
66 D B -1.2033 Soluble
67 Y B -1.1685 Soluble
68 A B -1.5180 Soluble
69 D B -2.5603 Soluble
70 S B -1.8132 Soluble
71 V B 0.0000 Buried
72 K B -2.7087 Soluble
74 G B -1.7348 Soluble
75 R B -1.2616 Soluble
76 F B 0.0000 Buried
77 T B -0.8657 Soluble
78 I B 0.0000 Buried
79 S B -0.5410 Soluble
80 R B -1.2174 Soluble
81 D B -1.6876 Soluble
82 N B -1.9709 Soluble
83 S B -1.5254 Soluble
84 K B -2.3098 Soluble
85 N B -1.6321 Soluble
86 T B -0.9598 Soluble
87 L B 0.0000 Buried
88 Y B -0.4537 Soluble
89 L B 0.0000 Buried
90 Q B -1.1324 Soluble
91 M B 0.0000 Buried
92 N B -1.3317 Soluble
93 S B -1.1499 Soluble
94 L B 0.0000 Buried
95 R B -2.2364 Soluble
96 A B -1.6781 Soluble
97 E B -2.2233 Soluble
98 D B 0.0000 Buried
99 T B -0.4023 Soluble
100 A B 0.0000 Buried
101 V B 0.7505 Aggregation-prone
102 Y B 0.0000 Buried
103 Y B 0.0000 Buried
104 C B 0.0000 Buried
105 A B 0.0000 Buried
106 K B 0.0000 Buried
107 L B 0.1955 Aggregation-prone
108 E B -0.4863 Soluble
114 Y B -0.0433 Soluble
115 F B 0.0000 Buried
116 D B -0.1890 Soluble
117 Y B 0.5459 Aggregation-prone
118 W B -0.1278 Soluble
119 G B 0.0000 Buried
120 Q B -1.3777 Soluble
121 G B -0.4143 Soluble
122 T B 0.4505 Aggregation-prone
123 L B 1.4659 Aggregation-prone
124 V B 0.0000 Buried
125 T B 0.0171 Aggregation-prone
126 V B 0.0000 Buried
127 S B -0.8692 Soluble
128 S B -0.8043 Soluble
129 A B -0.5442 Soluble
130 S B -0.6403 Soluble
131 T B -0.8878 Soluble
132 K B -1.5674 Soluble
133 G B -1.5881 Soluble
134 P B 0.0000 Buried
135 S B -0.3591 Soluble
136 V B 0.0000 Buried
137 F B 0.0000 Buried
138 P B -1.2533 Soluble
139 L B 0.0000 Buried
140 A B -0.3796 Soluble
141 S B -0.3659 Soluble
142 T B -0.3568 Soluble
143 A B -0.0119 Soluble
144 A B 0.0095 Aggregation-prone
145 L B 0.0000 Buried
146 G B 0.0000 Buried
147 C B 0.0000 Buried
148 L B 0.0000 Buried
149 V B 0.0000 Buried
150 K B 0.0000 Buried
151 D B -0.7267 Soluble
152 Y B 0.0000 Buried
153 F B 0.0000 Buried
154 P B -0.7228 Soluble
155 E B -1.0341 Soluble
156 P B -1.0677 Soluble
157 V B -0.7956 Soluble
158 T B -0.6061 Soluble
159 V B -0.3476 Soluble
160 S B -0.4797 Soluble
161 W B 0.0000 Buried
162 N B -1.0059 Soluble
163 S B -0.7734 Soluble
164 G B -0.5943 Soluble
165 A B -0.2562 Soluble
166 L B -0.0890 Soluble
167 T B -0.2133 Soluble
168 S B -0.2648 Soluble
169 G B -0.4637 Soluble
170 V B 0.1074 Aggregation-prone
171 H B -0.1729 Soluble
172 T B 0.0467 Aggregation-prone
173 F B 0.0000 Buried
174 P B -0.3159 Soluble
175 A B 0.1623 Aggregation-prone
176 V B 0.6035 Aggregation-prone
177 L B 1.1771 Aggregation-prone
178 Q B 0.3106 Aggregation-prone
179 S B -0.0427 Soluble
180 S B -0.2513 Soluble
181 G B 0.0036 Aggregation-prone
182 L B -0.0882 Soluble
183 Y B 0.3533 Aggregation-prone
184 S B 0.0000 Buried
185 L B 0.0000 Buried
186 S B 0.0000 Buried
187 S B 0.0000 Buried
188 V B 0.0000 Buried
189 V B 0.0000 Buried
190 T B -0.1423 Soluble
191 V B 0.0000 Buried
192 P B -0.2327 Soluble
193 S B -0.1513 Soluble
194 S B -0.2889 Soluble
195 S B 0.0000 Buried
196 L B -0.0142 Soluble
197 G B -0.7891 Soluble
198 T B -0.7820 Soluble
199 K B -1.7981 Soluble
200 T B -1.5144 Soluble
201 Y B 0.0000 Buried
202 T B -1.9457 Soluble
203 C B 0.0000 Buried
204 N B -1.6493 Soluble
205 V B 0.0000 Buried
206 D B -1.8304 Soluble
207 H B 0.0000 Buried
208 K B -2.7616 Soluble
209 P B -1.7704 Soluble
210 S B -1.9230 Soluble
211 N B -2.5686 Soluble
212 T B -2.0816 Soluble
213 K B -2.6369 Soluble
214 V B -1.5428 Soluble
215 D B -2.7249 Soluble
216 K B -2.0872 Soluble
217 R B -2.8904 Soluble
218 V B 0.0000 Buried
219 E B -2.2531 Soluble
1 D A -2.0803 Soluble
2 I A -1.5800 Soluble
3 Q A -2.1174 Soluble
4 M A 0.0000 Buried
5 T A -1.3225 Soluble
6 Q A -1.0067 Soluble
7 S A -0.7042 Soluble
8 P A -0.5015 Soluble
9 S A -0.6535 Soluble
10 T A -0.4325 Soluble
11 L A -0.2145 Soluble
12 S A -0.4914 Soluble
13 A A 0.0000 Buried
14 S A -0.4986 Soluble
15 V A 0.3025 Aggregation-prone
16 G A -0.7397 Soluble
17 D A -1.7356 Soluble
18 R A -2.2816 Soluble
19 V A 0.0000 Buried
20 T A -0.5309 Soluble
21 I A 0.0000 Buried
22 T A -0.7976 Soluble
23 C A 0.0000 Buried
24 R A -2.7481 Soluble
25 A A 0.0000 Buried
26 S A -1.9210 Soluble
27 Q A -2.1450 Soluble
28 S A -1.3278 Soluble
29 I A 0.0000 Buried
36 S A -0.7219 Soluble
37 S A -0.5879 Soluble
38 W A -0.1033 Soluble
39 L A 0.0000 Buried
40 A A 0.0000 Buried
41 W A 0.0000 Buried
42 Y A 0.0000 Buried
43 Q A 0.0000 Buried
44 Q A -1.3472 Soluble
45 K A -1.8494 Soluble
46 P A -1.5050 Soluble
47 G A -1.7484 Soluble
48 K A -2.6722 Soluble
49 A A -1.6269 Soluble
50 P A 0.0000 Buried
51 K A -1.5426 Soluble
52 L A 0.0000 Buried
53 L A 0.0000 Buried
54 I A 0.0000 Buried
55 Y A -0.1892 Soluble
56 K A -0.8948 Soluble
57 A A 0.0000 Buried
65 S A -0.5297 Soluble
66 S A -0.3092 Soluble
67 L A 0.0445 Aggregation-prone
68 E A -0.5644 Soluble
69 S A -0.4801 Soluble
70 G A -0.5347 Soluble
71 V A -0.3847 Soluble
72 P A -0.3300 Soluble
74 S A -0.4259 Soluble
75 R A -0.8451 Soluble
76 F A 0.0000 Buried
77 S A -0.3312 Soluble
78 G A -0.4073 Soluble
79 S A -0.7306 Soluble
80 G A -1.0115 Soluble
83 S A -0.9848 Soluble
84 G A -1.0858 Soluble
85 T A -1.6680 Soluble
86 D A -1.9822 Soluble
87 F A 0.0000 Buried
88 T A -0.7099 Soluble
89 L A 0.0000 Buried
90 T A -0.6068 Soluble
91 I A 0.0000 Buried
92 S A -1.3769 Soluble
93 S A -1.1383 Soluble
94 L A 0.0000 Buried
95 R A -1.4949 Soluble
96 P A -1.1221 Soluble
97 E A -2.1197 Soluble
98 D A 0.0000 Buried
99 F A -0.4942 Soluble
100 A A 0.0000 Buried
101 T A -0.6084 Soluble
102 Y A 0.0000 Buried
103 Y A 0.0000 Buried
104 C A 0.0000 Buried
105 Q A 0.0000 Buried
106 Q A 0.0000 Buried
107 Y A -0.1565 Soluble
108 N A -0.5902 Soluble
109 S A -0.4075 Soluble
114 Y A -0.1777 Soluble
115 P A -0.5502 Soluble
116 L A 0.0000 Buried
117 T A -0.6336 Soluble
118 F A -0.3133 Soluble
119 G A 0.0000 Buried
120 G A -1.1550 Soluble
121 G A 0.0000 Buried
122 T A 0.0000 Buried
123 K A -0.8845 Soluble
124 V A 0.0000 Buried
125 E A 0.0000 Buried
126 I A -0.0107 Soluble
127 K A -1.1988 Soluble
128 R A -0.9957 Soluble
129 T A -0.0532 Soluble
130 V A 0.7829 Aggregation-prone
131 A A 0.3009 Aggregation-prone
132 A A -0.0170 Soluble
133 P A 0.0000 Buried
134 S A -0.1681 Soluble
135 V A 0.0000 Buried
136 F A 0.0640 Aggregation-prone
137 I A 0.1090 Aggregation-prone
138 F A 0.0000 Buried
139 P A -0.6651 Soluble
140 P A 0.0000 Buried
141 S A -1.7551 Soluble
142 D A -3.1511 Soluble
143 E A -3.3353 Soluble
144 Q A 0.0000 Buried
145 L A 0.0000 Buried
146 K A -3.0304 Soluble
147 S A -1.8776 Soluble
148 G A -1.3507 Soluble
149 T A -1.1139 Soluble
150 A A 0.0000 Buried
151 S A 0.0000 Buried
152 V A 0.0000 Buried
153 V A 0.0000 Buried
154 C A 0.0000 Buried
155 L A 0.0000 Buried
156 L A 0.0000 Buried
157 N A 0.0000 Buried
158 N A -0.7148 Soluble
159 F A 0.0000 Buried
160 Y A 0.0000 Buried
161 P A -1.1398 Soluble
162 R A -1.9087 Soluble
163 E A -2.5771 Soluble
164 A A -1.8761 Soluble
165 K A -2.0327 Soluble
166 V A -0.9195 Soluble
167 Q A -0.5990 Soluble
168 W A 0.0000 Buried
169 K A -0.6886 Soluble
170 V A 0.0000 Buried
171 D A -1.9291 Soluble
172 N A -1.3901 Soluble
173 A A -0.3331 Soluble
174 L A 0.7112 Aggregation-prone
175 Q A -0.1327 Soluble
176 S A -0.5107 Soluble
177 G A -0.9268 Soluble
178 N A -0.8950 Soluble
179 S A -1.1225 Soluble
180 Q A -1.2967 Soluble
181 E A -1.8399 Soluble
182 S A -0.7453 Soluble
183 V A -0.5810 Soluble
184 T A -1.0165 Soluble
185 E A -2.1105 Soluble
186 Q A -1.6572 Soluble
187 D A -2.0192 Soluble
188 S A -1.7402 Soluble
189 K A -2.2678 Soluble
190 D A -1.5935 Soluble
191 S A -1.5773 Soluble
192 T A 0.0000 Buried
193 Y A 0.0000 Buried
194 S A 0.0000 Buried
195 L A 0.0000 Buried
196 S A 0.0000 Buried
197 S A 0.0000 Buried
198 T A -0.6568 Soluble
199 L A 0.0000 Buried
200 T A -0.2877 Soluble
201 L A -0.7671 Soluble
202 S A -1.1730 Soluble
203 K A -2.1836 Soluble
204 A A -2.0716 Soluble
205 D A -2.9310 Soluble
206 Y A 0.0000 Buried
207 E A -3.7722 Soluble
208 K A -3.7764 Soluble
209 H A -3.2938 Soluble
210 K A -3.3673 Soluble
211 V A -1.8087 Soluble
212 Y A 0.0000 Buried
213 A A 0.0000 Buried
214 C A 0.0000 Buried
215 E A -1.0596 Soluble
216 V A 0.0000 Buried
217 T A -1.1163 Soluble
218 H A 0.0000 Buried
219 Q A -1.5605 Soluble
220 G A -0.3194 Soluble
221 L A -0.1157 Soluble
222 S A -0.4210 Soluble
223 S A -0.3862 Soluble
224 P A -0.5418 Soluble
225 V A -0.0327 Soluble
226 T A -0.5106 Soluble
227 K A -0.7257 Soluble
228 S A -0.7988 Soluble
229 F A -1.1037 Soluble
230 N A -2.4164 Soluble
231 R A -2.5563 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
Load structure to view sequence…
Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.7549 2.1427 CSV PDB
4.5 -0.7968 2.1427 CSV PDB
5.0 -0.8456 2.1427 CSV PDB
5.5 -0.892 2.1427 CSV PDB
6.0 -0.925 2.1427 CSV PDB
6.5 -0.9356 2.1427 CSV PDB
7.0 -0.9233 2.1427 CSV PDB
7.5 -0.896 2.1427 CSV PDB
8.0 -0.8606 2.1427 CSV PDB
8.5 -0.8191 2.1427 CSV PDB
9.0 -0.7713 2.1427 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH