Amatuximab / 4f33

A4DAB011_4f33_H_G | Source PDB: 4f33 | Chains: H, G | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.6839
Max Score
1.4212
Min Score
-3.5893
Total Score
-292.73
Score CDR
-0.3384
Score non-CDR
-0.7245

Calculation Parameters

Chain Sequence(s) VQLQQSGPELEKPGASVKISCKASGYSFTGYTMNWVKQSHGKSLEWIGLITPYNGASSYNQKFRGKATLTVDKSSSTAYMDLLSLTSEDSAVYFCARGGYDGRGFDYWGSGTPVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKDIELTQSPAIMSASPGEKVTMTCSASSSVSYMHWYQQKSGTSPKRWIYDTSKLASGVPGRFSGSGSGNSYSLTISSVEAEDDATYYCQQWSKHPLTFGSGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG input.pdb
Selected Chain(s) H (Heavy), G (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.5893
Maximum Score 1.4212
Average Score -0.6839
Total Score -292.727

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
2 V H 0.8919 Aggregation-prone
3 Q H -0.8224 Soluble
4 L H 0.0000 Buried
5 Q H -1.8555 Soluble
6 Q H 0.0000 Buried
7 S H -0.9114 Soluble
8 G H -0.8135 Soluble
9 P H -0.6757 Soluble
11 E H -0.8937 Soluble
12 L H -0.6878 Soluble
13 E H -1.4486 Soluble
14 K H -2.2210 Soluble
15 P H -1.5730 Soluble
16 G H -1.1043 Soluble
17 A H -0.8455 Soluble
18 S H -0.7978 Soluble
19 V H -0.9970 Soluble
20 K H -1.6973 Soluble
21 I H 0.0000 Buried
22 S H -0.8905 Soluble
23 C H 0.0000 Buried
24 K H -1.9861 Soluble
25 A H 0.0000 Buried
26 S H -0.6464 Soluble
27 G H -0.0322 Soluble
28 Y H 0.1073 Aggregation-prone
29 S H -0.1080 Soluble
30 F H 0.0000 Buried
35 T H -0.0876 Soluble
36 G H 0.1836 Aggregation-prone
37 Y H 0.3339 Aggregation-prone
38 T H 0.0000 Buried
39 M H 0.0000 Buried
40 N H 0.0000 Buried
41 W H 0.0000 Buried
42 V H 0.0000 Buried
43 K H -0.6494 Soluble
44 Q H 0.0000 Buried
45 S H -1.5335 Soluble
46 H H -1.7893 Soluble
47 G H -1.8628 Soluble
48 K H -2.4862 Soluble
49 S H -1.5885 Soluble
50 L H 0.0000 Buried
51 E H -1.0468 Soluble
52 W H 0.0000 Buried
53 I H 0.0000 Buried
54 G H 0.0000 Buried
55 L H 0.2121 Aggregation-prone
56 I H 0.0000 Buried
57 T H 0.1899 Aggregation-prone
58 P H 0.0000 Buried
59 Y H 0.4145 Aggregation-prone
62 N H -0.8645 Soluble
63 G H -0.7354 Soluble
64 A H -0.2519 Soluble
65 S H -0.2251 Soluble
66 S H -0.4616 Soluble
67 Y H -1.1488 Soluble
68 N H 0.0000 Buried
69 Q H -2.8211 Soluble
70 K H -2.9556 Soluble
71 F H 0.0000 Buried
72 R H -3.0438 Soluble
74 G H -1.8265 Soluble
75 K H -1.4082 Soluble
76 A H 0.0000 Buried
77 T H -0.7091 Soluble
78 L H 0.0000 Buried
79 T H -0.3607 Soluble
80 V H -0.9774 Soluble
81 D H -2.0887 Soluble
82 K H -2.0433 Soluble
83 S H -1.3302 Soluble
84 S H -1.2996 Soluble
85 S H -1.3973 Soluble
86 T H 0.0000 Buried
87 A H 0.0000 Buried
88 Y H -0.6270 Soluble
89 M H 0.0000 Buried
90 D H -0.9058 Soluble
91 L H 0.0000 Buried
92 L H -0.1096 Soluble
93 S H -0.4865 Soluble
94 L H 0.0000 Buried
95 T H -1.2458 Soluble
96 S H -1.5130 Soluble
97 E H -1.9777 Soluble
98 D H 0.0000 Buried
99 S H -0.8663 Soluble
100 A H -0.6817 Soluble
101 V H 0.0797 Aggregation-prone
102 Y H 0.0000 Buried
103 F H 0.0000 Buried
105 A H 0.0000 Buried
106 R H 0.0000 Buried
107 G H 0.0000 Buried
108 G H -0.1935 Soluble
109 Y H 0.3105 Aggregation-prone
110 D H -1.3063 Soluble
112 G H -0.5289 Soluble
113 R H -0.7843 Soluble
114 G H -0.1729 Soluble
115 F H 0.0000 Buried
116 D H -0.4390 Soluble
117 Y H -0.0991 Soluble
118 W H 0.0000 Buried
119 G H 0.0000 Buried
120 S H -0.6888 Soluble
121 G H -0.3436 Soluble
122 T H 0.0000 Buried
123 P H -0.1472 Soluble
124 V H 0.0000 Buried
125 T H -0.7823 Soluble
126 V H 0.0000 Buried
127 S H -0.9826 Soluble
128 S H -1.0459 Soluble
129 A H -0.6147 Soluble
130 S H -0.7119 Soluble
131 T H -0.8249 Soluble
132 K H -1.1401 Soluble
133 G H -1.3608 Soluble
134 P H -0.6340 Soluble
135 S H -0.2190 Soluble
136 V H 0.0000 Buried
137 F H -0.5824 Soluble
138 P H -1.1058 Soluble
139 L H 0.0000 Buried
140 A H -1.2735 Soluble
141 P H 0.0000 Buried
142 S H -1.1901 Soluble
143 S H -0.9440 Soluble
144 K H -1.1602 Soluble
145 S H 0.0000 Buried
146 T H -0.7695 Soluble
147 S H -0.8264 Soluble
148 G H -0.8451 Soluble
149 G H -0.9082 Soluble
150 T H -0.6343 Soluble
151 A H 0.0000 Buried
152 A H 0.0000 Buried
153 L H 0.0000 Buried
154 G H 0.0000 Buried
156 L H 0.0000 Buried
157 V H 0.0000 Buried
158 K H 0.0000 Buried
159 D H -0.3499 Soluble
160 Y H 0.0000 Buried
161 F H 0.0000 Buried
162 P H 0.0000 Buried
163 E H -0.6261 Soluble
164 P H -0.8218 Soluble
165 V H -0.8000 Soluble
166 T H -0.7264 Soluble
167 V H -0.5247 Soluble
168 S H -0.4783 Soluble
169 W H 0.0000 Buried
170 N H -0.7090 Soluble
171 S H -0.6440 Soluble
172 G H -0.5200 Soluble
173 A H -0.2440 Soluble
174 L H 0.0082 Aggregation-prone
175 T H -0.1841 Soluble
176 S H -0.1945 Soluble
177 G H -0.2356 Soluble
178 V H 0.1372 Aggregation-prone
179 H H -0.3440 Soluble
180 T H -0.1959 Soluble
181 F H 0.0000 Buried
182 P H -0.3307 Soluble
183 A H 0.2637 Aggregation-prone
184 V H 0.6941 Aggregation-prone
185 L H 1.2774 Aggregation-prone
186 Q H 0.3700 Aggregation-prone
187 S H -0.0771 Soluble
188 S H -0.2019 Soluble
189 G H 0.0432 Aggregation-prone
190 L H 0.2278 Aggregation-prone
191 Y H 0.5086 Aggregation-prone
192 S H 0.0000 Buried
193 L H 0.0000 Buried
194 S H 0.0000 Buried
195 S H 0.0000 Buried
196 V H 0.0000 Buried
197 V H 0.0000 Buried
198 T H -0.1317 Soluble
199 V H 0.0000 Buried
200 P H -0.6293 Soluble
201 S H -0.6071 Soluble
202 S H -0.5829 Soluble
203 S H -0.6097 Soluble
204 L H -0.7552 Soluble
205 G H -0.9288 Soluble
206 T H -0.6904 Soluble
207 Q H -1.1622 Soluble
208 T H -1.0483 Soluble
209 Y H 0.0000 Buried
210 I H -1.1404 Soluble
211 C H 0.0000 Buried
212 N H -1.5705 Soluble
213 V H 0.0000 Buried
214 N H -2.3865 Soluble
215 H H 0.0000 Buried
216 K H -2.6045 Soluble
217 P H -1.5693 Soluble
218 S H -1.7800 Soluble
219 N H -2.4551 Soluble
220 T H -2.1224 Soluble
221 K H -2.8327 Soluble
222 V H -1.7061 Soluble
223 D H -2.4683 Soluble
224 K H -1.8006 Soluble
225 K H -2.3184 Soluble
226 V H 0.0000 Buried
227 E H -2.7412 Soluble
228 P H -1.8421 Soluble
229 K H -2.2254 Soluble
1 D G -2.7798 Soluble
2 I G 0.0000 Buried
3 E G -2.4463 Soluble
4 L G 0.0000 Buried
5 T G -0.6920 Soluble
6 Q G 0.0000 Buried
7 S G -0.0423 Soluble
8 P G 0.2688 Aggregation-prone
9 A G 0.5717 Aggregation-prone
10 I G 1.4212 Aggregation-prone
11 M G 0.5254 Aggregation-prone
12 S G -0.2297 Soluble
13 A G 0.0000 Buried
14 S G -1.5203 Soluble
15 P G -1.8315 Soluble
16 G G -1.6684 Soluble
17 E G -2.1234 Soluble
18 K G -2.2831 Soluble
19 V G -0.9581 Soluble
20 T G -0.3926 Soluble
21 M G 0.0000 Buried
22 T G -0.2404 Soluble
23 C G 0.0000 Buried
24 S G -0.8213 Soluble
25 A G 0.0000 Buried
26 S G -1.3904 Soluble
27 S G -1.3862 Soluble
28 S G -1.0328 Soluble
29 V G 0.0000 Buried
37 S G 0.1247 Aggregation-prone
38 Y G 0.7925 Aggregation-prone
39 M G 0.0000 Buried
40 H G 0.0000 Buried
41 W G 0.0000 Buried
42 Y G 0.0000 Buried
43 Q G 0.0000 Buried
44 Q G -1.0569 Soluble
45 K G -1.4205 Soluble
46 S G -1.1099 Soluble
47 G G -1.0233 Soluble
48 T G -0.8111 Soluble
49 S G -0.7943 Soluble
50 P G 0.0000 Buried
51 K G -1.8624 Soluble
52 R G -1.0090 Soluble
53 W G 0.0000 Buried
54 I G 0.0000 Buried
55 Y G -0.2054 Soluble
56 D G 0.0109 Aggregation-prone
57 T G -0.1286 Soluble
65 S G -0.6787 Soluble
66 K G -1.1147 Soluble
67 L G -0.3589 Soluble
68 A G -0.5627 Soluble
69 S G -0.4655 Soluble
70 G G -0.4728 Soluble
71 V G -0.5180 Soluble
72 P G -0.3944 Soluble
74 G G -0.6433 Soluble
75 R G -1.0074 Soluble
76 F G 0.0000 Buried
77 S G -0.6169 Soluble
78 G G -0.4475 Soluble
79 S G -0.5582 Soluble
80 G G -0.5809 Soluble
83 S G -0.6367 Soluble
84 G G -0.9476 Soluble
85 N G -1.1523 Soluble
86 S G -0.8285 Soluble
87 Y G 0.0000 Buried
88 S G -0.3563 Soluble
89 L G 0.0000 Buried
90 T G -0.5363 Soluble
91 I G 0.0000 Buried
92 S G -1.4488 Soluble
93 S G -1.7436 Soluble
94 V G 0.0000 Buried
95 E G -2.3059 Soluble
96 A G -2.3197 Soluble
97 E G -2.6000 Soluble
98 D G 0.0000 Buried
99 D G 0.0000 Buried
100 A G 0.0000 Buried
101 T G -0.5964 Soluble
102 Y G 0.0000 Buried
103 Y G 0.0000 Buried
104 C G 0.0000 Buried
105 Q G 0.0000 Buried
106 Q G 0.0000 Buried
107 W G -0.0219 Soluble
108 S G -0.7574 Soluble
109 K G -2.3091 Soluble
114 H G -1.9266 Soluble
115 P G -1.6636 Soluble
116 L G -0.8787 Soluble
117 T G -1.0847 Soluble
118 F G 0.0000 Buried
119 G G 0.0000 Buried
120 S G -0.9272 Soluble
121 G G 0.0000 Buried
122 T G 0.0000 Buried
123 K G -0.3398 Soluble
124 V G 0.0000 Buried
125 E G -0.7921 Soluble
126 I G 0.0000 Buried
127 K G -1.3902 Soluble
128 R G -1.0475 Soluble
129 T G -0.0417 Soluble
130 V G 0.5228 Aggregation-prone
131 A G 0.0376 Aggregation-prone
132 A G -0.0595 Soluble
133 P G 0.0000 Buried
134 S G -0.2299 Soluble
135 V G 0.0000 Buried
136 F G 0.0000 Buried
137 I G 0.0000 Buried
138 F G 0.0000 Buried
139 P G -0.7966 Soluble
140 P G -0.8417 Soluble
141 S G -1.7889 Soluble
142 D G -3.0147 Soluble
143 E G -2.9527 Soluble
144 Q G 0.0000 Buried
145 L G -2.2866 Soluble
146 K G -2.9041 Soluble
147 S G -1.7884 Soluble
148 G G -1.4578 Soluble
149 T G -1.1038 Soluble
150 A G 0.0000 Buried
151 S G 0.0000 Buried
152 V G 0.0000 Buried
153 V G 0.0000 Buried
154 C G 0.0000 Buried
155 L G 0.0000 Buried
156 L G 0.0000 Buried
157 N G 0.0000 Buried
158 N G -0.8936 Soluble
159 F G 0.0000 Buried
160 Y G 0.0000 Buried
161 P G -1.4695 Soluble
162 R G -2.4227 Soluble
163 E G -2.9579 Soluble
164 A G -2.1310 Soluble
165 K G -2.2041 Soluble
166 V G -0.9899 Soluble
167 Q G -0.6931 Soluble
168 W G 0.0000 Buried
169 K G -0.7659 Soluble
170 V G 0.0000 Buried
171 D G -1.8739 Soluble
172 N G -1.4206 Soluble
173 A G -0.4080 Soluble
174 L G 0.3887 Aggregation-prone
175 Q G -0.2596 Soluble
176 S G -0.4763 Soluble
177 G G -0.8494 Soluble
178 N G -0.7557 Soluble
179 S G -0.9524 Soluble
180 Q G -1.0351 Soluble
181 E G -1.5910 Soluble
182 S G -0.7870 Soluble
183 V G -0.9229 Soluble
184 T G -1.0774 Soluble
185 E G -2.0189 Soluble
186 Q G 0.0000 Buried
187 D G -2.0590 Soluble
188 S G -2.3490 Soluble
189 K G -2.6886 Soluble
190 D G -1.9147 Soluble
191 S G 0.0000 Buried
192 T G 0.0000 Buried
193 Y G 0.0000 Buried
194 S G 0.0000 Buried
195 L G 0.0000 Buried
196 S G 0.0000 Buried
197 S G 0.0000 Buried
198 T G -0.5409 Soluble
199 L G 0.0000 Buried
200 T G -0.2653 Soluble
201 L G -0.7063 Soluble
202 S G -1.1734 Soluble
203 K G -2.3184 Soluble
204 A G -2.0218 Soluble
205 D G -3.0503 Soluble
206 Y G 0.0000 Buried
207 E G -3.2680 Soluble
208 K G -3.5893 Soluble
209 H G -3.3063 Soluble
210 K G -3.2640 Soluble
211 V G -1.8789 Soluble
212 Y G 0.0000 Buried
213 A G 0.0000 Buried
214 C G 0.0000 Buried
215 E G -0.8393 Soluble
216 V G 0.0000 Buried
217 T G -1.0991 Soluble
218 H G 0.0000 Buried
219 Q G -1.7239 Soluble
220 G G -0.4910 Soluble
221 L G -0.2548 Soluble
222 S G -0.4721 Soluble
223 S G -0.4261 Soluble
224 P G -0.4335 Soluble
225 V G 0.0262 Aggregation-prone
226 T G -0.4055 Soluble
227 K G -0.7375 Soluble
228 S G -0.8435 Soluble
229 F G 0.0000 Buried
230 N G -2.3648 Soluble
231 R G -2.5437 Soluble
232 G G -1.5386 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
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Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.8465 2.2982 CSV PDB
4.5 -0.8854 2.2902 CSV PDB
5.0 -0.9311 2.2816 CSV PDB
5.5 -0.972 2.2772 CSV PDB
6.0 -0.9941 2.2862 CSV PDB
6.5 -0.9872 2.3218 CSV PDB
7.0 -0.953 2.3894 CSV PDB
7.5 -0.9022 2.4792 CSV PDB
8.0 -0.8433 2.5789 CSV PDB
8.5 -0.7793 2.6822 CSV PDB
9.0 -0.7107 2.7863 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH