Volagidemab / 5xf1

A4DAB298_5xf1_H_L | Source PDB: 5xf1 | Chains: H, L | Done
99.15
Yes
10 Å
Yes
Avg A4D Score
-0.6868
Max Score
2.7478
Min Score
-3.4492
Total Score
-305.62
Score CDR
-0.2961
Score non-CDR
-0.7419

Calculation Parameters

Chain Sequence(s) QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVMYYDGSNKDYVDSVKGRFTISRDNSKNTLYLQMNRLRAEDTAVYYCAREKDHYDILTGYNYYYGLDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDIQMTQSPSSLSASVGDRVTITCRASQGIRNDLGWYQQKPGKAPKRLIYAASSLESGVPSRFSGSGSGTEFTLTISSVQPEDFVTYYCLQHNSNPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC input.pdb
Selected Chain(s) H (Heavy), L (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.4492
Maximum Score 2.7478
Average Score -0.6868
Total Score -305.6203

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
1 Q H -0.9373 Soluble
2 V H 0.2191 Aggregation-prone
3 Q H -0.4374 Soluble
4 L H 0.0000 Buried
5 V H 0.4413 Aggregation-prone
6 E H 0.0000 Buried
7 S H -0.6101 Soluble
8 G H -0.8999 Soluble
9 G H -0.4235 Soluble
11 G H 0.5011 Aggregation-prone
12 V H 1.3157 Aggregation-prone
13 V H 0.0000 Buried
14 Q H -1.3933 Soluble
15 P H -2.0619 Soluble
16 G H -2.6563 Soluble
17 R H -3.0372 Soluble
18 S H -2.4626 Soluble
19 L H -1.6167 Soluble
20 R H -2.2550 Soluble
21 L H 0.0000 Buried
22 S H -0.6337 Soluble
23 C H 0.0000 Buried
24 A H -0.3125 Soluble
25 A H 0.0000 Buried
26 S H -0.5242 Soluble
27 G H -0.4822 Soluble
28 F H -0.0459 Soluble
29 T H -0.0934 Soluble
30 F H 0.0000 Buried
35 S H -0.4364 Soluble
36 S H -0.1557 Soluble
37 Y H -0.0967 Soluble
38 G H 0.0000 Buried
39 M H 0.0000 Buried
40 H H 0.0000 Buried
41 W H 0.0000 Buried
42 V H 0.0000 Buried
43 R H 0.0000 Buried
44 Q H -0.8913 Soluble
45 A H -1.3292 Soluble
46 P H -0.9816 Soluble
47 G H -1.4637 Soluble
48 K H -2.3097 Soluble
49 G H -1.5056 Soluble
50 L H 0.0000 Buried
51 E H -1.2988 Soluble
52 W H 0.0000 Buried
53 V H 0.0000 Buried
54 A H 0.0000 Buried
55 V H 0.0000 Buried
56 M H 0.0000 Buried
57 Y H -0.6754 Soluble
58 Y H -0.4239 Soluble
59 D H -1.9059 Soluble
62 G H -1.6631 Soluble
63 S H -1.6462 Soluble
64 N H -2.1609 Soluble
65 K H -1.9152 Soluble
66 D H -1.6139 Soluble
67 Y H -1.3121 Soluble
68 V H -1.4838 Soluble
69 D H -2.3981 Soluble
70 S H -1.7712 Soluble
71 V H 0.0000 Buried
72 K H -2.6028 Soluble
74 G H -1.8923 Soluble
75 R H -1.9327 Soluble
76 F H 0.0000 Buried
77 T H -1.0945 Soluble
78 I H 0.0000 Buried
79 S H -0.5071 Soluble
80 R H -0.9282 Soluble
81 D H -1.6856 Soluble
82 N H -1.6285 Soluble
83 S H -1.6920 Soluble
84 K H -2.4119 Soluble
85 N H -1.8074 Soluble
86 T H 0.0000 Buried
87 L H 0.0000 Buried
88 Y H -0.7557 Soluble
89 L H 0.0000 Buried
90 Q H -1.5753 Soluble
91 M H 0.0000 Buried
92 N H -2.4896 Soluble
93 R H -3.2074 Soluble
94 L H 0.0000 Buried
95 R H -2.8103 Soluble
96 A H -1.6136 Soluble
97 E H -2.2351 Soluble
98 D H 0.0000 Buried
99 T H -0.5956 Soluble
100 A H 0.0000 Buried
101 V H 0.0362 Aggregation-prone
102 Y H 0.0000 Buried
103 Y H 0.0000 Buried
104 C H 0.0000 Buried
105 A H 0.0000 Buried
106 R H -0.3768 Soluble
107 E H 0.0000 Buried
108 K H -0.5444 Soluble
109 D H -0.2030 Soluble
110 H H 0.1466 Aggregation-prone
111 Y H 1.2580 Aggregation-prone
111A D H 1.4888 Aggregation-prone
111B I H 2.7478 Aggregation-prone
111C L H 2.5911 Aggregation-prone
111D T H 1.4240 Aggregation-prone
112D G H 1.3034 Aggregation-prone
112C Y H 1.4964 Aggregation-prone
112B N H 0.3413 Aggregation-prone
112A Y H 0.5874 Aggregation-prone
112 Y H 0.5216 Aggregation-prone
113 Y H 0.7228 Aggregation-prone
114 G H 0.0000 Buried
115 L H 0.0000 Buried
116 D H -0.5456 Soluble
117 V H -0.2464 Soluble
118 W H 0.0000 Buried
119 G H -0.6507 Soluble
120 Q H -1.1977 Soluble
121 G H -0.6465 Soluble
122 T H -0.2566 Soluble
123 T H 0.0206 Aggregation-prone
124 V H 0.0000 Buried
125 T H 0.0637 Aggregation-prone
126 V H 0.0000 Buried
127 S H -0.2635 Soluble
128 S H -0.3149 Soluble
129 A H -0.2845 Soluble
130 S H -0.4413 Soluble
131 T H -0.6843 Soluble
132 K H -1.2404 Soluble
133 G H -1.3406 Soluble
134 P H -0.6098 Soluble
135 S H -0.2523 Soluble
136 V H 0.0000 Buried
137 F H 0.0000 Buried
138 P H -1.0255 Soluble
139 L H 0.0000 Buried
140 A H -1.2127 Soluble
141 P H 0.0000 Buried
142 S H -1.2468 Soluble
143 S H -1.1084 Soluble
144 K H -1.6847 Soluble
145 S H 0.0000 Buried
146 T H -0.9192 Soluble
147 S H -0.7798 Soluble
148 G H -0.8174 Soluble
149 G H -0.8761 Soluble
150 T H -0.6035 Soluble
151 A H 0.0000 Buried
152 A H 0.0000 Buried
153 L H 0.0000 Buried
154 G H 0.0000 Buried
155 C H 0.0000 Buried
156 L H 0.0000 Buried
157 V H 0.0000 Buried
158 K H 0.0000 Buried
159 D H -0.4020 Soluble
160 Y H 0.0000 Buried
161 F H 0.0000 Buried
162 P H 0.0000 Buried
163 E H -0.7755 Soluble
164 P H -1.0815 Soluble
165 V H 0.0000 Buried
166 T H -0.6758 Soluble
167 V H -0.3788 Soluble
168 S H -0.2931 Soluble
169 W H 0.0000 Buried
170 N H -0.7037 Soluble
171 S H -0.5334 Soluble
172 G H -0.3326 Soluble
173 A H -0.1677 Soluble
174 L H 0.0047 Aggregation-prone
175 T H -0.1811 Soluble
176 S H -0.2418 Soluble
177 G H -0.3219 Soluble
178 V H 0.0563 Aggregation-prone
179 H H -0.4060 Soluble
180 T H 0.0266 Aggregation-prone
181 F H 0.0000 Buried
182 P H -0.4811 Soluble
183 A H 0.0379 Aggregation-prone
184 V H 0.2037 Aggregation-prone
185 L H 0.8833 Aggregation-prone
186 Q H 0.1559 Aggregation-prone
187 S H -0.1594 Soluble
188 S H -0.2179 Soluble
189 G H -0.0076 Soluble
190 L H -0.0468 Soluble
191 Y H 0.0000 Buried
192 S H 0.0000 Buried
193 L H 0.0000 Buried
194 S H 0.0000 Buried
195 S H 0.0000 Buried
196 V H 0.0000 Buried
197 V H 0.0000 Buried
198 T H -0.2017 Soluble
199 V H 0.0000 Buried
200 P H -0.4895 Soluble
201 S H -0.5776 Soluble
202 S H -0.5099 Soluble
203 S H -0.4393 Soluble
204 L H -0.5707 Soluble
205 G H -0.8685 Soluble
206 T H -0.5861 Soluble
207 Q H -0.7855 Soluble
208 T H -0.9879 Soluble
209 Y H 0.0000 Buried
210 I H -1.2124 Soluble
211 C H 0.0000 Buried
212 N H 0.0000 Buried
213 V H 0.0000 Buried
214 N H -1.9232 Soluble
215 H H 0.0000 Buried
216 K H -2.8554 Soluble
217 P H -1.8132 Soluble
218 S H -1.9362 Soluble
219 N H -2.5927 Soluble
220 T H -2.0896 Soluble
221 K H -2.5850 Soluble
222 V H -1.4879 Soluble
223 D H -2.2934 Soluble
224 K H -2.0128 Soluble
225 K H -2.4422 Soluble
226 V H 0.0000 Buried
227 E H -2.7012 Soluble
228 P H -1.8520 Soluble
229 K H -2.3072 Soluble
230 S H -1.0488 Soluble
231 C H -0.0946 Soluble
1 D L -2.5608 Soluble
2 I L 0.0000 Buried
3 Q L -2.2224 Soluble
4 M L 0.0000 Buried
5 T L -1.4346 Soluble
6 Q L -1.0152 Soluble
7 S L -0.7011 Soluble
8 P L -0.5296 Soluble
9 S L -0.6714 Soluble
10 S L -0.5466 Soluble
11 L L -0.3024 Soluble
12 S L -0.5438 Soluble
13 A L 0.0000 Buried
14 S L -0.3755 Soluble
15 V L 0.4251 Aggregation-prone
16 G L -0.7971 Soluble
17 D L -1.8358 Soluble
18 R L -2.3581 Soluble
19 V L 0.0000 Buried
20 T L -0.6638 Soluble
21 I L 0.0000 Buried
22 T L -1.0072 Soluble
23 C L 0.0000 Buried
24 R L -2.9802 Soluble
25 A L 0.0000 Buried
26 S L -2.1770 Soluble
27 Q L -2.4233 Soluble
28 G L -2.2253 Soluble
29 I L 0.0000 Buried
36 R L -2.6584 Soluble
37 N L -1.9614 Soluble
38 D L 0.0000 Buried
39 L L 0.0000 Buried
40 G L 0.0000 Buried
41 W L 0.0000 Buried
42 Y L 0.0000 Buried
43 Q L 0.0000 Buried
44 Q L 0.0000 Buried
45 K L -1.5120 Soluble
46 P L -1.4011 Soluble
47 G L -1.6214 Soluble
48 K L -2.5094 Soluble
49 A L -1.6346 Soluble
50 P L 0.0000 Buried
51 K L -1.6231 Soluble
52 R L 0.0000 Buried
53 L L 0.0000 Buried
54 I L 0.0000 Buried
55 Y L 0.4660 Aggregation-prone
56 A L -0.0805 Soluble
57 A L 0.0000 Buried
65 S L -0.3084 Soluble
66 S L 0.0907 Aggregation-prone
67 L L 0.3746 Aggregation-prone
68 E L -0.3969 Soluble
69 S L -0.4533 Soluble
70 G L -0.5399 Soluble
71 V L -0.2367 Soluble
72 P L -0.3443 Soluble
74 S L -0.4111 Soluble
75 R L -0.6859 Soluble
76 F L 0.0000 Buried
77 S L -0.2335 Soluble
78 G L -0.2223 Soluble
79 S L -0.8790 Soluble
80 G L -1.6224 Soluble
83 S L -1.9870 Soluble
84 G L -2.3414 Soluble
85 T L -2.4774 Soluble
86 E L -2.8013 Soluble
87 F L 0.0000 Buried
88 T L -0.9432 Soluble
89 L L 0.0000 Buried
90 T L -0.6190 Soluble
91 I L 0.0000 Buried
92 S L -1.4115 Soluble
93 S L -1.2067 Soluble
94 V L 0.0000 Buried
95 Q L -0.9079 Soluble
96 P L -0.6719 Soluble
97 E L -1.3261 Soluble
98 D L 0.0000 Buried
99 F L -0.2271 Soluble
100 V L 0.0000 Buried
101 T L -0.5885 Soluble
102 Y L 0.0000 Buried
103 Y L 0.0000 Buried
104 C L 0.0000 Buried
105 L L 0.0000 Buried
106 Q L 0.0000 Buried
107 H L -0.6269 Soluble
108 N L -1.1179 Soluble
109 S L -1.3178 Soluble
114 N L -1.9189 Soluble
115 P L -1.6226 Soluble
116 L L 0.0000 Buried
117 T L -1.0347 Soluble
118 F L -0.4204 Soluble
119 G L 0.0000 Buried
120 G L -1.1975 Soluble
121 G L -0.8703 Soluble
122 T L 0.0000 Buried
123 K L -0.8967 Soluble
124 V L 0.0000 Buried
125 E L 0.0000 Buried
126 I L -0.1297 Soluble
127 K L -0.8560 Soluble
128 R L -0.7695 Soluble
129 T L -0.0360 Soluble
130 V L 0.5563 Aggregation-prone
131 A L 0.1742 Aggregation-prone
132 A L -0.0664 Soluble
133 P L 0.0000 Buried
134 S L -0.1992 Soluble
135 V L 0.0000 Buried
136 F L 0.0000 Buried
137 I L 0.0000 Buried
138 F L 0.0000 Buried
139 P L -0.6915 Soluble
140 P L 0.0000 Buried
141 S L -1.3530 Soluble
142 D L -2.7755 Soluble
143 E L -2.3140 Soluble
144 Q L 0.0000 Buried
145 L L -1.7720 Soluble
146 K L -2.5692 Soluble
147 S L -1.6188 Soluble
148 G L -1.1959 Soluble
149 T L -0.7954 Soluble
150 A L 0.0000 Buried
151 S L 0.0000 Buried
152 V L 0.0000 Buried
153 V L 0.0000 Buried
154 C L 0.0000 Buried
155 L L 0.0000 Buried
156 L L 0.0000 Buried
157 N L 0.0000 Buried
158 N L -0.8711 Soluble
159 F L 0.0000 Buried
160 Y L 0.0000 Buried
161 P L -1.2097 Soluble
162 R L -1.7919 Soluble
163 E L -2.5913 Soluble
164 A L -1.9548 Soluble
165 K L -2.1670 Soluble
166 V L -0.9621 Soluble
167 Q L -0.4158 Soluble
168 W L 0.0000 Buried
169 K L -0.5845 Soluble
170 V L 0.0000 Buried
171 D L -2.3319 Soluble
172 N L -1.6776 Soluble
173 A L -0.2923 Soluble
174 L L 0.7747 Aggregation-prone
175 Q L -0.3055 Soluble
176 S L -0.6069 Soluble
177 G L -1.2573 Soluble
178 N L -1.6228 Soluble
179 S L -1.4777 Soluble
180 Q L -1.5313 Soluble
181 E L -1.9144 Soluble
182 S L -0.6013 Soluble
183 V L -0.4388 Soluble
184 T L -0.8807 Soluble
185 E L -2.0584 Soluble
186 Q L -1.7807 Soluble
187 D L -1.8640 Soluble
188 S L -1.6464 Soluble
189 K L -2.2581 Soluble
190 D L -1.7361 Soluble
191 S L -1.6456 Soluble
192 T L 0.0000 Buried
193 Y L 0.0000 Buried
194 S L 0.0000 Buried
195 L L 0.0000 Buried
196 S L 0.0000 Buried
197 S L 0.0000 Buried
198 T L -0.7608 Soluble
199 L L 0.0000 Buried
200 T L -0.5999 Soluble
201 L L 0.0000 Buried
202 S L -0.9514 Soluble
203 K L -1.8956 Soluble
204 A L -1.6326 Soluble
205 D L -2.0712 Soluble
206 Y L 0.0000 Buried
207 E L -3.3515 Soluble
208 K L -3.4156 Soluble
209 H L -3.0492 Soluble
210 K L -3.4492 Soluble
211 V L -2.0174 Soluble
212 Y L 0.0000 Buried
213 A L 0.0000 Buried
214 C L 0.0000 Buried
215 E L -0.6316 Soluble
216 V L 0.0000 Buried
217 T L -1.0843 Soluble
218 H L 0.0000 Buried
219 Q L -1.6023 Soluble
220 G L -0.4098 Soluble
221 L L -0.1918 Soluble
222 S L -0.4203 Soluble
223 S L -0.3838 Soluble
224 P L -0.5072 Soluble
225 V L 0.0551 Aggregation-prone
226 T L -0.3062 Soluble
227 K L -0.7326 Soluble
228 S L -0.7900 Soluble
229 F L -1.3163 Soluble
230 N L -2.3094 Soluble
231 R L -2.4103 Soluble
232 G L -1.8374 Soluble
233 E L -2.3220 Soluble
234 C L -0.9923 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
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Downloads
Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
Load structure at specific pH condition
A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.733 4.0638 CSV PDB
4.5 -0.7734 4.0188 CSV PDB
5.0 -0.8207 3.97 CSV PDB
5.5 -0.8649 3.9227 CSV PDB
6.0 -0.8945 3.8807 CSV PDB
6.5 -0.9005 3.8432 CSV PDB
7.0 -0.8837 3.8043 CSV PDB
7.5 -0.8527 3.7605 CSV PDB
8.0 -0.8146 3.7146 CSV PDB
8.5 -0.7715 3.6734 CSV PDB
9.0 -0.723 3.6439 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH