Matuzumab / 5vr9

A4DAB167_5vr9_A_B | Source PDB: 5vr9 | Chains: A, B | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.7099
Max Score
1.8995
Min Score
-3.5188
Total Score
-306.66
Score CDR
-0.3358
Score non-CDR
-0.7545

Calculation Parameters

Chain Sequence(s) QVQLVQSGAEVKKPGASVKVSCKASGYTFTSHWMHWVRQAPGQGLEWIGEFNPSGRTNYNEKFKSKATMTVDTSTNTAYMELSSLRSEDTAVYYCASRDYDYDGRYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSQMTQSPSSLSASVGDRVTITCSASSSVTYMYWYQQKPGKAPKLLIYDTSNLASGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQWSSHIFTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE input.pdb
Selected Chain(s) A (Heavy), B (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.5188
Maximum Score 1.8995
Average Score -0.7099
Total Score -306.6636

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
1 Q A -1.3425 Soluble
2 V A -0.7600 Soluble
3 Q A -1.3517 Soluble
4 L A 0.0000 Buried
5 V A -0.3260 Soluble
6 Q A 0.0000 Buried
7 S A -0.8748 Soluble
8 G A -1.2809 Soluble
9 A A -1.2571 Soluble
11 E A -1.7661 Soluble
12 V A -1.1064 Soluble
13 K A -1.7132 Soluble
14 K A -2.3602 Soluble
15 P A -1.8066 Soluble
16 G A -1.4287 Soluble
17 A A -1.1570 Soluble
18 S A -1.3095 Soluble
19 V A 0.0000 Buried
20 K A -1.9755 Soluble
21 V A 0.0000 Buried
22 S A -0.6491 Soluble
23 C A 0.0000 Buried
24 K A -1.1801 Soluble
25 A A 0.0000 Buried
26 S A -0.8529 Soluble
27 G A -0.7718 Soluble
28 Y A -0.2503 Soluble
29 T A 0.0365 Aggregation-prone
30 F A 0.0000 Buried
35 T A -0.2913 Soluble
36 S A -0.1528 Soluble
37 H A 0.0000 Buried
38 W A -0.4671 Soluble
39 M A 0.0000 Buried
40 H A -0.1936 Soluble
41 W A 0.0000 Buried
42 V A 0.0000 Buried
43 R A -0.5812 Soluble
44 Q A -0.8050 Soluble
45 A A -1.0706 Soluble
46 P A -0.8635 Soluble
47 G A -1.2341 Soluble
48 Q A -1.9107 Soluble
49 G A -1.4692 Soluble
50 L A 0.0000 Buried
51 E A -1.1964 Soluble
52 W A 0.0000 Buried
53 I A 0.0000 Buried
54 G A 0.0000 Buried
55 E A -0.5226 Soluble
56 F A 0.0000 Buried
57 N A -1.1236 Soluble
58 P A -0.8720 Soluble
59 S A -0.8126 Soluble
63 G A -1.4636 Soluble
64 R A -2.2973 Soluble
65 T A -1.2716 Soluble
66 N A -1.3192 Soluble
67 Y A -1.3573 Soluble
68 N A 0.0000 Buried
69 E A -3.3276 Soluble
70 K A -3.1959 Soluble
71 F A 0.0000 Buried
72 K A -2.9937 Soluble
74 S A -1.8344 Soluble
75 K A -1.6292 Soluble
76 A A 0.0000 Buried
77 T A -0.8818 Soluble
78 M A 0.0000 Buried
79 T A -0.4971 Soluble
80 V A -0.2179 Soluble
81 D A -0.7961 Soluble
82 T A -0.5871 Soluble
83 S A -0.5408 Soluble
84 T A -0.7159 Soluble
85 N A -0.9226 Soluble
86 T A 0.0000 Buried
87 A A 0.0000 Buried
88 Y A -0.4935 Soluble
89 M A 0.0000 Buried
90 E A -1.5403 Soluble
91 L A 0.0000 Buried
92 S A -1.0622 Soluble
93 S A -1.0768 Soluble
94 L A 0.0000 Buried
95 R A -2.6887 Soluble
96 S A -2.1033 Soluble
97 E A -2.4117 Soluble
98 D A 0.0000 Buried
99 T A -0.9448 Soluble
100 A A 0.0000 Buried
101 V A 0.1005 Aggregation-prone
102 Y A 0.0000 Buried
103 Y A 0.0000 Buried
104 C A 0.0000 Buried
105 A A 0.0000 Buried
106 S A 0.0000 Buried
107 R A -0.3548 Soluble
108 D A -0.4336 Soluble
109 Y A -0.0805 Soluble
110 D A -0.4013 Soluble
111 Y A 0.0602 Aggregation-prone
112A D A -1.7100 Soluble
112 G A -1.4300 Soluble
113 R A -2.0247 Soluble
114 Y A -0.8964 Soluble
115 F A 0.0000 Buried
116 D A -0.5077 Soluble
117 Y A -0.5034 Soluble
118 W A -0.6806 Soluble
119 G A 0.0000 Buried
120 Q A -1.5399 Soluble
121 G A -0.7761 Soluble
122 T A 0.0000 Buried
123 L A -0.2489 Soluble
124 V A 0.0000 Buried
125 T A -0.9586 Soluble
126 V A 0.0000 Buried
127 S A -1.1311 Soluble
128 S A -1.0181 Soluble
129 A A -0.6685 Soluble
130 S A -0.7907 Soluble
131 T A -1.2321 Soluble
132 K A -1.5609 Soluble
133 G A -1.5829 Soluble
134 P A -0.7498 Soluble
135 S A -0.3603 Soluble
136 V A 0.0000 Buried
137 F A 0.0000 Buried
138 P A -1.3045 Soluble
139 L A 0.0000 Buried
140 A A -1.2463 Soluble
141 P A 0.0000 Buried
142 S A -1.0402 Soluble
143 S A -0.7463 Soluble
144 K A -1.1541 Soluble
145 S A 0.0000 Buried
146 T A -0.7992 Soluble
147 S A -0.7756 Soluble
148 G A -0.8654 Soluble
149 G A -0.9100 Soluble
150 T A -0.6385 Soluble
151 A A 0.0000 Buried
152 A A 0.0000 Buried
153 L A 0.0000 Buried
154 G A 0.0000 Buried
155 C A 0.0000 Buried
156 L A 0.0000 Buried
157 V A 0.0000 Buried
158 K A 0.0000 Buried
159 D A -0.6019 Soluble
160 Y A 0.0000 Buried
161 F A -0.4576 Soluble
162 P A 0.0000 Buried
163 E A -0.5263 Soluble
164 P A -0.7998 Soluble
165 V A 0.0000 Buried
166 T A -0.6135 Soluble
167 V A -0.3776 Soluble
168 S A -0.3642 Soluble
169 W A 0.0000 Buried
170 N A -0.7224 Soluble
171 S A -0.6226 Soluble
172 G A -0.5549 Soluble
173 A A -0.2286 Soluble
174 L A 0.0273 Aggregation-prone
175 T A -0.1646 Soluble
176 S A -0.1786 Soluble
177 G A -0.2271 Soluble
178 V A 0.1705 Aggregation-prone
179 H A -0.3020 Soluble
180 T A -0.1681 Soluble
181 F A 0.0000 Buried
182 P A -0.4314 Soluble
183 A A 0.0943 Aggregation-prone
184 V A 0.2940 Aggregation-prone
185 L A 1.0255 Aggregation-prone
186 Q A 0.1746 Aggregation-prone
187 S A -0.1495 Soluble
188 S A -0.2881 Soluble
189 G A -0.0530 Soluble
190 L A 0.0572 Aggregation-prone
191 Y A 0.3216 Aggregation-prone
192 S A 0.0000 Buried
193 L A 0.0000 Buried
194 S A 0.0000 Buried
195 S A 0.0000 Buried
196 V A 0.0000 Buried
197 V A 0.0000 Buried
198 T A -0.1543 Soluble
199 V A 0.0000 Buried
200 P A -0.6359 Soluble
201 S A -0.5804 Soluble
202 S A -0.6146 Soluble
203 S A -0.6627 Soluble
204 L A -0.8408 Soluble
205 G A -1.0040 Soluble
206 T A -0.8423 Soluble
207 Q A -1.5509 Soluble
208 T A -1.2275 Soluble
209 Y A 0.0000 Buried
210 I A -1.0127 Soluble
211 C A 0.0000 Buried
212 N A -1.3384 Soluble
213 V A 0.0000 Buried
214 N A -1.8614 Soluble
215 H A 0.0000 Buried
216 K A -2.9330 Soluble
217 P A -2.0252 Soluble
218 S A -2.0504 Soluble
219 N A -2.7228 Soluble
220 T A -2.1411 Soluble
221 K A -2.5957 Soluble
222 V A -1.2948 Soluble
223 D A -2.1366 Soluble
224 K A -1.7877 Soluble
225 K A -2.4023 Soluble
226 V A 0.0000 Buried
227 E A -2.9288 Soluble
228 P A -1.9847 Soluble
229 K A -2.5757 Soluble
230 S A -1.3243 Soluble
3 Q B -1.3064 Soluble
4 M B 0.0000 Buried
5 T B -0.8826 Soluble
6 Q B 0.0000 Buried
7 S B -0.4744 Soluble
8 P B -0.5583 Soluble
9 S B -0.7627 Soluble
10 S B -0.7043 Soluble
11 L B -0.5519 Soluble
12 S B -1.0670 Soluble
13 A B -1.1033 Soluble
14 S B -0.9548 Soluble
15 V B 0.0809 Aggregation-prone
16 G B -0.7705 Soluble
17 D B -1.6465 Soluble
18 R B -2.2733 Soluble
19 V B 0.0000 Buried
20 T B -0.6453 Soluble
21 I B 0.0000 Buried
22 T B -0.5412 Soluble
23 C B 0.0000 Buried
24 S B -1.1845 Soluble
25 A B -1.0159 Soluble
26 S B -0.7232 Soluble
27 S B -0.0565 Soluble
28 S B 0.3713 Aggregation-prone
29 V B 1.8995 Aggregation-prone
37 T B 1.4165 Aggregation-prone
38 Y B 1.4773 Aggregation-prone
39 M B 0.0000 Buried
40 Y B 0.2368 Aggregation-prone
41 W B 0.0000 Buried
42 Y B 0.0000 Buried
43 Q B 0.0000 Buried
44 Q B 0.0000 Buried
45 K B -1.7662 Soluble
46 P B -1.5086 Soluble
47 G B -1.8201 Soluble
48 K B -2.5370 Soluble
49 A B -1.6067 Soluble
50 P B 0.0000 Buried
51 K B -1.6128 Soluble
52 L B 0.0000 Buried
53 L B 0.0000 Buried
54 I B 0.0000 Buried
55 Y B -0.1130 Soluble
56 D B -0.3117 Soluble
57 T B -0.1882 Soluble
65 S B -0.6060 Soluble
66 N B -0.9193 Soluble
67 L B -0.2243 Soluble
68 A B -0.3996 Soluble
69 S B -0.6704 Soluble
70 G B -0.5347 Soluble
71 V B 0.0000 Buried
72 P B -0.3909 Soluble
74 S B -0.4320 Soluble
75 R B -0.7474 Soluble
76 F B 0.0000 Buried
77 S B -0.4420 Soluble
78 G B 0.0000 Buried
79 S B -0.7817 Soluble
80 G B -1.0278 Soluble
83 S B -1.2183 Soluble
84 G B -1.0538 Soluble
85 T B -1.1539 Soluble
86 D B -2.2192 Soluble
87 Y B 0.0000 Buried
88 T B -0.6755 Soluble
89 F B 0.0000 Buried
90 T B -0.6112 Soluble
91 I B 0.0000 Buried
92 S B -1.3225 Soluble
93 S B -1.1189 Soluble
94 L B 0.0000 Buried
95 Q B -0.8439 Soluble
96 P B -1.5759 Soluble
97 E B -1.9540 Soluble
98 D B 0.0000 Buried
99 I B 0.0000 Buried
100 A B 0.0000 Buried
101 T B -0.7618 Soluble
102 Y B 0.0000 Buried
103 Y B 0.0000 Buried
104 C B 0.0000 Buried
105 Q B 0.0000 Buried
106 Q B 0.0000 Buried
107 W B 0.7133 Aggregation-prone
108 S B 0.0460 Aggregation-prone
109 S B -0.5466 Soluble
114 H B -1.0756 Soluble
115 I B -0.4050 Soluble
116 F B 0.1532 Aggregation-prone
117 T B -0.3133 Soluble
118 F B 0.0000 Buried
119 G B 0.0000 Buried
120 Q B -1.6527 Soluble
121 G B 0.0000 Buried
122 T B 0.0000 Buried
123 K B -1.2148 Soluble
124 V B 0.0000 Buried
125 E B -1.5141 Soluble
126 I B 0.0000 Buried
127 K B -1.5861 Soluble
128 R B -1.0559 Soluble
129 T B -0.1363 Soluble
130 V B 0.4003 Aggregation-prone
131 A B 0.1960 Aggregation-prone
132 A B -0.0429 Soluble
133 P B 0.0000 Buried
134 S B -0.1268 Soluble
135 V B -0.2002 Soluble
136 F B 0.0000 Buried
137 I B 0.0000 Buried
138 F B 0.0000 Buried
139 P B -0.6516 Soluble
140 P B 0.0000 Buried
141 S B 0.0000 Buried
142 D B -3.3618 Soluble
143 E B -3.2253 Soluble
144 Q B 0.0000 Buried
145 L B -2.3840 Soluble
146 K B -2.9661 Soluble
147 S B -1.9321 Soluble
148 G B -1.2954 Soluble
149 T B -1.2437 Soluble
150 A B 0.0000 Buried
151 S B 0.0000 Buried
152 V B 0.0000 Buried
153 V B 0.0000 Buried
154 C B 0.0000 Buried
155 L B 0.0000 Buried
156 L B 0.0000 Buried
157 N B -0.3382 Soluble
158 N B -0.7985 Soluble
159 F B 0.0000 Buried
160 Y B 0.0000 Buried
161 P B -1.7678 Soluble
162 R B -2.9453 Soluble
163 E B -3.1181 Soluble
164 A B -2.0411 Soluble
165 K B -1.6433 Soluble
166 V B -0.8195 Soluble
167 Q B -0.3525 Soluble
168 W B 0.0000 Buried
169 K B -0.5225 Soluble
170 V B 0.0000 Buried
171 D B -1.8053 Soluble
172 N B -1.3739 Soluble
173 A B -0.2604 Soluble
174 L B 0.7606 Aggregation-prone
175 Q B -0.0222 Soluble
176 S B -0.4298 Soluble
177 G B -0.8517 Soluble
178 N B -0.7479 Soluble
179 S B -1.0861 Soluble
180 Q B -1.4341 Soluble
181 E B -2.0019 Soluble
182 S B -1.0749 Soluble
183 V B -1.0871 Soluble
184 T B -1.1887 Soluble
185 E B -2.3356 Soluble
186 Q B 0.0000 Buried
187 D B -1.8824 Soluble
188 S B -2.1338 Soluble
189 K B -2.4897 Soluble
190 D B -1.7546 Soluble
191 S B 0.0000 Buried
192 T B 0.0000 Buried
193 Y B 0.0000 Buried
194 S B 0.0000 Buried
195 L B 0.0000 Buried
196 S B 0.0000 Buried
197 S B 0.0000 Buried
198 T B -0.6764 Soluble
199 L B 0.0000 Buried
200 T B -0.3930 Soluble
201 L B -0.5945 Soluble
202 S B -1.1899 Soluble
203 K B -2.1084 Soluble
204 A B -2.0173 Soluble
205 D B -2.4720 Soluble
206 Y B 0.0000 Buried
207 E B -3.4058 Soluble
208 K B -3.5188 Soluble
209 H B -3.0513 Soluble
210 K B -3.2655 Soluble
211 V B -1.5850 Soluble
212 Y B 0.0000 Buried
213 A B 0.0000 Buried
214 C B 0.0000 Buried
215 E B -0.5558 Soluble
216 V B 0.0000 Buried
217 T B -1.0325 Soluble
218 H B 0.0000 Buried
219 Q B -1.6839 Soluble
220 G B -0.3855 Soluble
221 L B -0.2119 Soluble
222 S B -0.4558 Soluble
223 S B -0.4371 Soluble
224 P B -0.5344 Soluble
225 V B 0.0221 Aggregation-prone
226 T B -0.3935 Soluble
227 K B -0.7435 Soluble
228 S B -0.7814 Soluble
229 F B 0.0000 Buried
230 N B -2.2759 Soluble
231 R B -2.8396 Soluble
232 G B -2.5153 Soluble
233 E B -2.6276 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
Load structure to view sequence…
Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.84 1.5604 CSV PDB
4.5 -0.8815 1.5604 CSV PDB
5.0 -0.9304 1.5604 CSV PDB
5.5 -0.9762 1.5604 CSV PDB
6.0 -1.0064 1.5604 CSV PDB
6.5 -1.0114 1.5604 CSV PDB
7.0 -0.9911 1.5604 CSV PDB
7.5 -0.9539 1.5604 CSV PDB
8.0 -0.9078 1.5604 CSV PDB
8.5 -0.8556 1.5604 CSV PDB
9.0 -0.798 1.5604 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH