Trontinemab / 5csz

A4DAB279_5csz_A_B | Source PDB: 5csz | Chains: A, B | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.6911
Max Score
1.2127
Min Score
-3.212
Total Score
-294.41
Score CDR
-0.343
Score non-CDR
-0.7817

Calculation Parameters

Chain Sequence(s) VELVESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAINASGTRTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARGKGYVRYFDVWGQGTLVTVSSASTKGPSVFPLAPSTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKDIVLTQSPATLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGVPARFSGSGSGTDFTLTISSLEPEDFATYYCLQIYNMPITFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE input.pdb
Selected Chain(s) A (Heavy), B (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.212
Maximum Score 1.2127
Average Score -0.6911
Total Score -294.408

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
2 V A 0.7342 Aggregation-prone
3 E A -0.9875 Soluble
4 L A 0.0000 Buried
5 V A -0.0551 Soluble
6 E A 0.0000 Buried
7 S A -0.6140 Soluble
8 G A -0.9318 Soluble
9 G A -0.5419 Soluble
11 G A -0.3090 Soluble
12 L A -0.0543 Soluble
13 V A -0.6228 Soluble
14 Q A -1.5650 Soluble
15 P A -1.6773 Soluble
16 G A -1.3749 Soluble
17 G A -1.0397 Soluble
18 S A -1.2769 Soluble
19 L A -1.2171 Soluble
20 R A -2.2688 Soluble
21 L A 0.0000 Buried
22 S A -0.6013 Soluble
23 C A 0.0000 Buried
24 A A -0.4413 Soluble
25 A A 0.0000 Buried
26 S A -0.4341 Soluble
27 G A -0.1240 Soluble
28 F A 0.0958 Aggregation-prone
29 T A -0.0444 Soluble
30 F A 0.0000 Buried
35 S A -0.7876 Soluble
36 S A -0.2569 Soluble
37 Y A -0.0953 Soluble
38 A A -0.2610 Soluble
39 M A 0.0000 Buried
40 S A 0.0000 Buried
41 W A 0.0000 Buried
42 V A 0.0000 Buried
43 R A 0.0000 Buried
44 Q A -0.8146 Soluble
45 A A -1.1705 Soluble
46 P A -0.9454 Soluble
47 G A -1.4947 Soluble
48 K A -2.3873 Soluble
49 G A -1.6669 Soluble
50 L A 0.0000 Buried
51 E A -1.1596 Soluble
52 W A 0.0000 Buried
53 V A 0.0000 Buried
54 S A 0.0000 Buried
55 A A 0.0000 Buried
56 I A 0.0000 Buried
57 N A -0.9810 Soluble
58 A A -0.6522 Soluble
59 S A -0.9074 Soluble
62 G A -1.1178 Soluble
63 T A -1.1157 Soluble
64 R A -1.8032 Soluble
65 T A -0.8161 Soluble
66 Y A -0.5212 Soluble
67 Y A -0.8327 Soluble
68 A A 0.0000 Buried
69 D A -2.4245 Soluble
70 S A -1.7638 Soluble
71 V A 0.0000 Buried
72 K A -2.5383 Soluble
74 G A -1.6898 Soluble
75 R A -1.2569 Soluble
76 F A 0.0000 Buried
77 T A -0.9229 Soluble
78 I A 0.0000 Buried
79 S A -0.7318 Soluble
80 R A -1.0729 Soluble
81 D A -1.6230 Soluble
82 N A -1.7107 Soluble
83 S A -1.6003 Soluble
84 K A -2.3739 Soluble
85 N A -1.7203 Soluble
86 T A 0.0000 Buried
87 L A 0.0000 Buried
88 Y A -0.6670 Soluble
89 L A 0.0000 Buried
90 Q A -1.5799 Soluble
91 M A 0.0000 Buried
92 N A -1.3499 Soluble
93 S A -1.1741 Soluble
94 L A 0.0000 Buried
95 R A -2.3418 Soluble
96 A A -1.7485 Soluble
97 E A -2.2531 Soluble
98 D A 0.0000 Buried
99 T A -0.7413 Soluble
100 A A 0.0000 Buried
101 V A 0.2327 Aggregation-prone
102 Y A 0.0000 Buried
103 Y A 0.0000 Buried
104 C A 0.0000 Buried
105 A A 0.0000 Buried
106 R A 0.0000 Buried
107 G A 0.0000 Buried
108 K A -0.6107 Soluble
109 G A -0.3812 Soluble
110 Y A 1.2127 Aggregation-prone
112 V A 0.4069 Aggregation-prone
113 R A -0.1486 Soluble
114 Y A 0.0000 Buried
115 F A 0.0000 Buried
116 D A -0.5938 Soluble
117 V A -0.1312 Soluble
118 W A -0.3138 Soluble
119 G A 0.0000 Buried
120 Q A -1.4802 Soluble
121 G A -0.6211 Soluble
122 T A -0.1321 Soluble
123 L A 0.1156 Aggregation-prone
124 V A 0.0000 Buried
125 T A 0.0000 Buried
126 V A 0.0000 Buried
127 S A -0.9952 Soluble
128 S A -0.7146 Soluble
129 A A -0.5019 Soluble
130 S A -0.6106 Soluble
131 T A -0.6117 Soluble
132 K A -1.2063 Soluble
133 G A -1.3727 Soluble
134 P A 0.0000 Buried
135 S A -0.2729 Soluble
136 V A -0.2791 Soluble
137 F A -0.4985 Soluble
138 P A -0.9336 Soluble
139 L A 0.0000 Buried
140 A A -0.9481 Soluble
141 P A 0.0000 Buried
142 S A -0.5669 Soluble
143 T A -0.2678 Soluble
144 A A -0.1665 Soluble
145 A A 0.0000 Buried
146 L A 0.0000 Buried
147 G A 0.0000 Buried
148 C A 0.0000 Buried
149 L A 0.0000 Buried
150 V A 0.0000 Buried
151 K A 0.0000 Buried
152 D A -0.3872 Soluble
153 Y A 0.0000 Buried
154 F A 0.0000 Buried
155 P A 0.0000 Buried
156 E A -0.5508 Soluble
157 P A -0.7931 Soluble
158 V A -0.7781 Soluble
159 T A -0.6366 Soluble
160 V A -0.3884 Soluble
161 S A -0.4068 Soluble
162 W A 0.0000 Buried
163 N A -0.6639 Soluble
164 S A -0.6683 Soluble
165 G A -0.5146 Soluble
166 A A -0.2402 Soluble
167 L A 0.0057 Aggregation-prone
168 T A -0.1630 Soluble
169 S A -0.3762 Soluble
170 G A -0.4569 Soluble
171 V A 0.1517 Aggregation-prone
172 H A 0.0000 Buried
173 T A -0.1440 Soluble
174 F A 0.0000 Buried
175 P A -0.3640 Soluble
176 A A 0.1379 Aggregation-prone
177 V A 0.4468 Aggregation-prone
178 L A 0.9881 Aggregation-prone
179 Q A 0.1775 Aggregation-prone
180 S A -0.1868 Soluble
181 S A -0.2220 Soluble
182 G A -0.0109 Soluble
183 L A 0.1024 Aggregation-prone
184 Y A 0.3603 Aggregation-prone
185 S A 0.0000 Buried
186 L A 0.0000 Buried
187 S A 0.0000 Buried
188 S A 0.0000 Buried
189 V A 0.0000 Buried
190 V A 0.0000 Buried
191 T A -0.1398 Soluble
192 V A 0.0000 Buried
193 P A -0.4959 Soluble
194 S A -0.4582 Soluble
195 S A -0.5214 Soluble
196 S A -0.5783 Soluble
197 L A -0.6456 Soluble
198 G A -0.9651 Soluble
199 T A -0.8185 Soluble
200 Q A -1.0995 Soluble
201 T A -0.8745 Soluble
202 Y A 0.0000 Buried
203 I A -0.9576 Soluble
204 C A 0.0000 Buried
205 N A -1.4005 Soluble
206 V A 0.0000 Buried
207 N A -2.0926 Soluble
208 H A 0.0000 Buried
209 K A -2.7774 Soluble
210 P A -1.6251 Soluble
211 S A -1.8433 Soluble
212 N A -2.6040 Soluble
213 T A -2.0875 Soluble
214 K A -2.7098 Soluble
215 V A -1.4670 Soluble
216 D A -2.3629 Soluble
217 K A -1.7856 Soluble
218 K A -1.7940 Soluble
219 V A 0.0000 Buried
220 E A -2.0751 Soluble
221 P A -1.5975 Soluble
222 K A -2.2244 Soluble
1 D B -1.6272 Soluble
2 I B 0.0000 Buried
3 V B 0.5935 Aggregation-prone
4 L B 0.0000 Buried
5 T B -0.6949 Soluble
6 Q B 0.0000 Buried
7 S B -0.8146 Soluble
8 P B -0.3537 Soluble
9 A B -0.5703 Soluble
10 T B -0.5817 Soluble
11 L B -0.3976 Soluble
12 S B -0.6510 Soluble
13 L B -1.0435 Soluble
14 S B -1.4655 Soluble
15 P B -1.8018 Soluble
16 G B -1.8947 Soluble
17 E B -2.5704 Soluble
18 R B -2.7657 Soluble
19 A B 0.0000 Buried
20 T B -0.6897 Soluble
21 L B 0.0000 Buried
22 S B -0.8776 Soluble
23 C B 0.0000 Buried
24 R B -2.2789 Soluble
25 A B 0.0000 Buried
26 S B -1.0227 Soluble
27 Q B -1.6136 Soluble
28 S B -1.1848 Soluble
29 V B 0.0000 Buried
30 S B -0.2159 Soluble
36 S B -0.3359 Soluble
37 S B -0.0944 Soluble
38 Y B 0.2123 Aggregation-prone
39 L B 0.0000 Buried
40 A B 0.0000 Buried
41 W B 0.0000 Buried
42 Y B 0.0000 Buried
43 Q B 0.0000 Buried
44 Q B -1.2285 Soluble
45 K B -1.7601 Soluble
46 P B -1.5003 Soluble
47 G B -1.5071 Soluble
48 Q B -2.1291 Soluble
49 A B -1.3648 Soluble
50 P B 0.0000 Buried
51 R B -1.1737 Soluble
52 L B -0.4960 Soluble
53 L B 0.0000 Buried
54 I B 0.0000 Buried
55 Y B -0.2346 Soluble
56 G B -0.3355 Soluble
57 A B 0.0000 Buried
65 S B -0.6386 Soluble
66 S B -0.6735 Soluble
67 R B -1.1364 Soluble
68 A B -0.7391 Soluble
69 T B -0.5119 Soluble
70 G B -0.5838 Soluble
71 V B -0.5403 Soluble
72 P B -0.3772 Soluble
74 A B -0.3621 Soluble
75 R B -0.6901 Soluble
76 F B 0.0000 Buried
77 S B -0.5419 Soluble
78 G B 0.0000 Buried
79 S B -0.6473 Soluble
80 G B -1.0144 Soluble
83 S B -1.0383 Soluble
84 G B -1.1663 Soluble
85 T B -1.6974 Soluble
86 D B -2.0519 Soluble
87 F B 0.0000 Buried
88 T B -0.7577 Soluble
89 L B 0.0000 Buried
90 T B -0.6013 Soluble
91 I B 0.0000 Buried
92 S B -1.3957 Soluble
93 S B -1.7998 Soluble
94 L B 0.0000 Buried
95 E B -2.1719 Soluble
96 P B -1.6416 Soluble
97 E B -2.2814 Soluble
98 D B 0.0000 Buried
99 F B -1.0059 Soluble
100 A B 0.0000 Buried
101 T B -0.9960 Soluble
102 Y B 0.0000 Buried
103 Y B 0.0000 Buried
104 C B 0.0000 Buried
105 L B 0.0000 Buried
106 Q B 0.0000 Buried
107 I B 0.0000 Buried
108 Y B 0.2981 Aggregation-prone
109 N B -1.0503 Soluble
114 M B -0.4915 Soluble
115 P B -0.5785 Soluble
116 I B 0.0000 Buried
117 T B -0.1564 Soluble
118 F B -0.0170 Soluble
119 G B 0.0000 Buried
120 Q B -1.5350 Soluble
121 G B 0.0000 Buried
122 T B 0.0000 Buried
123 K B -1.6499 Soluble
124 V B 0.0000 Buried
125 E B -1.0945 Soluble
126 I B -0.6727 Soluble
127 K B -1.2919 Soluble
128 R B -0.9835 Soluble
129 T B -0.0746 Soluble
130 V B 0.3965 Aggregation-prone
131 A B -0.0287 Soluble
132 A B -0.0924 Soluble
133 P B 0.0000 Buried
134 S B -0.1883 Soluble
135 V B 0.0000 Buried
136 F B 0.0798 Aggregation-prone
137 I B 0.0472 Aggregation-prone
138 F B 0.0000 Buried
139 P B -0.4491 Soluble
140 P B -0.6986 Soluble
141 S B -1.6379 Soluble
142 D B -2.6814 Soluble
143 E B -2.9219 Soluble
144 Q B 0.0000 Buried
145 L B -2.1485 Soluble
146 K B -2.7673 Soluble
147 S B -1.7322 Soluble
148 G B -1.4006 Soluble
149 T B -0.8194 Soluble
150 A B 0.0000 Buried
151 S B 0.0000 Buried
152 V B 0.0000 Buried
153 V B 0.0000 Buried
154 C B 0.0000 Buried
155 L B 0.0000 Buried
156 L B 0.0000 Buried
157 N B 0.0000 Buried
158 N B -0.8904 Soluble
159 F B 0.0000 Buried
160 Y B 0.0000 Buried
161 P B -1.6225 Soluble
162 R B -2.9094 Soluble
163 E B -3.1537 Soluble
164 A B -2.3103 Soluble
165 K B -2.4844 Soluble
166 V B -1.2202 Soluble
167 Q B -0.8140 Soluble
168 W B 0.0000 Buried
169 K B -1.0027 Soluble
170 V B 0.0000 Buried
171 D B -1.7958 Soluble
172 N B -1.5966 Soluble
173 A B -0.4165 Soluble
174 L B 0.4708 Aggregation-prone
175 Q B -0.2729 Soluble
176 S B -0.4461 Soluble
177 G B -0.7884 Soluble
178 N B -0.9548 Soluble
179 S B -1.1120 Soluble
180 Q B -1.2974 Soluble
181 E B -1.8141 Soluble
182 S B -0.8233 Soluble
183 V B -0.9016 Soluble
184 T B -1.1894 Soluble
185 E B -2.2756 Soluble
186 Q B -1.8411 Soluble
187 D B -1.7762 Soluble
188 S B -1.8716 Soluble
189 K B -2.2139 Soluble
190 D B -1.5840 Soluble
191 S B -1.6114 Soluble
192 T B 0.0000 Buried
193 Y B 0.0000 Buried
194 S B 0.0000 Buried
195 L B 0.0000 Buried
196 S B 0.0000 Buried
197 S B 0.0000 Buried
198 T B -0.6040 Soluble
199 L B 0.0000 Buried
200 T B -0.3578 Soluble
201 L B -0.5800 Soluble
202 S B -1.1105 Soluble
203 K B -1.9518 Soluble
204 A B -1.6852 Soluble
205 D B -2.2400 Soluble
206 Y B 0.0000 Buried
207 E B -2.9246 Soluble
208 K B -3.2120 Soluble
209 H B -2.4407 Soluble
210 K B -2.1075 Soluble
211 V B -0.6843 Soluble
212 Y B 0.0000 Buried
213 A B -0.8387 Soluble
214 C B 0.0000 Buried
215 E B -1.2452 Soluble
216 V B 0.0000 Buried
217 T B -1.3001 Soluble
218 H B 0.0000 Buried
219 Q B -1.7166 Soluble
220 G B -0.4026 Soluble
221 L B -0.2096 Soluble
222 S B -0.4596 Soluble
223 S B -0.4391 Soluble
224 P B -0.6381 Soluble
225 V B -0.1666 Soluble
226 T B -0.6916 Soluble
227 K B -0.7998 Soluble
228 S B -0.5537 Soluble
229 F B -0.6832 Soluble
230 N B -1.4340 Soluble
231 R B -1.9281 Soluble
232 G B -1.8535 Soluble
233 E B -2.3610 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
Load structure to view sequence…
Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
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pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.7341 1.5266 CSV PDB
4.5 -0.7745 1.474 CSV PDB
5.0 -0.8227 1.3893 CSV PDB
5.5 -0.8695 1.2852 CSV PDB
6.0 -0.9036 1.2598 CSV PDB
6.5 -0.9157 1.2933 CSV PDB
7.0 -0.9045 1.355 CSV PDB
7.5 -0.877 1.4359 CSV PDB
8.0 -0.8406 1.5257 CSV PDB
8.5 -0.7981 1.6178 CSV PDB
9.0 -0.7502 1.7079 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH