Ficerafusp / 1yy8

A4DAB117_1yy8_B_A | Source PDB: 1yy8 | Chains: B, A | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.695
Max Score
1.9715
Min Score
-3.4572
Total Score
-301.61
Score CDR
-0.3386
Score non-CDR
-0.7372

Calculation Parameters

Chain Sequence(s) QVQLKQSGPGLVQPSQSLSITCTVSGFSLTNYGVHWVRQSPGKGLEWLGVIWSGGNTDYNTPFTSRLSINKDNSKSQVFFKMNSLQSNDTAIYYCARALTYYDYEFAYWGQGTLVTVSAASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSDILLTQSPVILSVSPGERVSFSCRASQSIGTNIHWYQQRTNGSPRLLIKYASESISGIPSRFSGSGSGTDFTLSINSVESEDIADYYCQQNNNWPTTFGAGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGA input.pdb
Selected Chain(s) B (Heavy), A (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.4572
Maximum Score 1.9715
Average Score -0.695
Total Score -301.609

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
1 Q B -1.4625 Soluble
2 V B -0.8815 Soluble
3 Q B -1.5683 Soluble
4 L B 0.0000 Buried
5 K B -2.2039 Soluble
6 Q B 0.0000 Buried
7 S B -0.7677 Soluble
8 G B -1.0525 Soluble
9 P B -0.4669 Soluble
11 G B -0.3989 Soluble
12 L B 0.0653 Aggregation-prone
13 V B -0.4637 Soluble
14 Q B -0.9811 Soluble
15 P B -1.3244 Soluble
16 S B -1.3937 Soluble
17 Q B -1.7418 Soluble
18 S B -1.6551 Soluble
19 L B 0.0000 Buried
20 S B -0.8650 Soluble
21 I B 0.0000 Buried
22 T B -0.5305 Soluble
23 C B 0.0000 Buried
24 T B -1.1438 Soluble
25 V B 0.0000 Buried
26 S B -1.1915 Soluble
27 G B -0.9843 Soluble
28 F B -0.5521 Soluble
29 S B -0.8849 Soluble
30 L B 0.0000 Buried
35 T B -0.9170 Soluble
36 N B -0.8363 Soluble
37 Y B 0.4622 Aggregation-prone
38 G B 0.0000 Buried
39 V B 0.0000 Buried
40 H B 0.0000 Buried
41 W B 0.0000 Buried
42 V B 0.0000 Buried
43 R B 0.0000 Buried
44 Q B -0.6873 Soluble
45 S B -1.0617 Soluble
46 P B -0.9688 Soluble
47 G B -1.4697 Soluble
48 K B -2.1758 Soluble
49 G B -1.2271 Soluble
50 L B 0.0000 Buried
51 E B -0.8540 Soluble
52 W B 0.0000 Buried
53 L B 0.0000 Buried
54 G B 0.0000 Buried
55 V B 0.0000 Buried
56 I B 0.0000 Buried
57 W B -0.5059 Soluble
58 S B -0.6100 Soluble
59 G B -1.2185 Soluble
63 G B -1.5145 Soluble
64 N B -1.8283 Soluble
65 T B -1.2837 Soluble
66 D B -0.9721 Soluble
67 Y B -0.3340 Soluble
68 N B 0.0000 Buried
69 T B -0.2840 Soluble
70 P B -0.3608 Soluble
71 F B 0.0000 Buried
72 T B -0.4510 Soluble
74 S B -0.6509 Soluble
75 R B -1.2387 Soluble
76 L B 0.0000 Buried
77 S B -1.2289 Soluble
78 I B 0.0000 Buried
79 N B -1.7991 Soluble
80 K B -1.5039 Soluble
81 D B -1.9665 Soluble
82 N B -2.2915 Soluble
83 S B -1.7421 Soluble
84 K B -2.4393 Soluble
85 S B -1.6745 Soluble
86 Q B -1.6061 Soluble
87 V B 0.0000 Buried
88 F B -0.3412 Soluble
89 F B 0.0000 Buried
90 K B -1.9978 Soluble
91 M B 0.0000 Buried
92 N B -2.1840 Soluble
93 S B -1.4910 Soluble
94 L B 0.0000 Buried
95 Q B -1.8676 Soluble
96 S B -1.3437 Soluble
97 N B -1.7018 Soluble
98 D B 0.0000 Buried
99 T B -0.4700 Soluble
100 A B 0.0000 Buried
101 I B 0.4986 Aggregation-prone
102 Y B 0.0000 Buried
103 Y B 0.0000 Buried
104 C B 0.0000 Buried
105 A B 0.0000 Buried
106 R B 0.0000 Buried
107 A B 0.0000 Buried
108 L B 1.0344 Aggregation-prone
109 T B 1.1536 Aggregation-prone
110 Y B 1.8670 Aggregation-prone
111 Y B 1.9715 Aggregation-prone
112 D B 0.0000 Buried
113 Y B 0.6165 Aggregation-prone
114 E B 0.0000 Buried
115 F B 0.0000 Buried
116 A B 0.2727 Aggregation-prone
117 Y B 0.2039 Aggregation-prone
118 W B -0.4719 Soluble
119 G B 0.0000 Buried
120 Q B -1.7803 Soluble
121 G B -0.8804 Soluble
122 T B 0.0000 Buried
123 L B 0.1929 Aggregation-prone
124 V B 0.0000 Buried
125 T B -0.1832 Soluble
126 V B 0.0000 Buried
127 S B -0.4795 Soluble
128 A B -0.2683 Soluble
129 A B -0.2021 Soluble
130 S B -0.4135 Soluble
131 T B -0.6588 Soluble
132 K B -1.1429 Soluble
133 G B -1.3277 Soluble
134 P B -0.5015 Soluble
135 S B -0.2944 Soluble
136 V B -0.3445 Soluble
137 F B 0.0000 Buried
138 P B -1.2038 Soluble
139 L B 0.0000 Buried
140 A B -0.9328 Soluble
141 P B 0.0000 Buried
142 S B -1.4305 Soluble
143 S B -1.3453 Soluble
144 K B -1.9718 Soluble
145 S B 0.0000 Buried
146 T B -0.9774 Soluble
147 S B -0.8195 Soluble
148 G B -0.7745 Soluble
149 G B -0.8061 Soluble
150 T B -0.5892 Soluble
151 A B 0.0000 Buried
152 A B 0.0000 Buried
153 L B 0.0000 Buried
154 G B 0.0000 Buried
155 C B 0.0000 Buried
156 L B 0.0000 Buried
157 V B 0.0000 Buried
158 K B 0.0000 Buried
159 D B -0.2741 Soluble
160 Y B 0.0000 Buried
161 F B 0.0000 Buried
162 P B 0.0000 Buried
163 E B -0.4037 Soluble
164 P B -0.5496 Soluble
165 V B -0.6517 Soluble
166 T B -0.6488 Soluble
167 V B -0.3733 Soluble
168 S B -0.3800 Soluble
169 W B 0.0000 Buried
170 N B -0.6703 Soluble
171 S B -0.6162 Soluble
172 G B -0.4452 Soluble
173 A B -0.1959 Soluble
174 L B 0.0392 Aggregation-prone
175 T B -0.1455 Soluble
176 S B -0.1745 Soluble
177 G B -0.1885 Soluble
178 V B 0.1812 Aggregation-prone
179 H B -0.3139 Soluble
180 T B 0.0181 Aggregation-prone
181 F B 0.0000 Buried
182 P B -0.3690 Soluble
183 A B 0.1837 Aggregation-prone
184 V B 0.4179 Aggregation-prone
185 L B 1.1781 Aggregation-prone
186 Q B 0.2948 Aggregation-prone
187 S B -0.0590 Soluble
188 S B -0.1924 Soluble
189 G B 0.0550 Aggregation-prone
190 L B 0.2218 Aggregation-prone
191 Y B 0.5502 Aggregation-prone
192 S B 0.0000 Buried
193 L B 0.0000 Buried
194 S B 0.0000 Buried
195 S B 0.0000 Buried
196 V B 0.0000 Buried
197 V B 0.0000 Buried
198 T B -0.1306 Soluble
199 V B 0.0000 Buried
200 P B -0.5119 Soluble
201 S B -0.5391 Soluble
202 S B -0.5796 Soluble
203 S B -0.6291 Soluble
204 L B -0.7539 Soluble
205 G B -0.9303 Soluble
206 T B -0.7407 Soluble
207 Q B -1.2050 Soluble
208 T B -1.0632 Soluble
209 Y B 0.0000 Buried
210 I B -1.1757 Soluble
211 C B 0.0000 Buried
212 N B -1.4252 Soluble
213 V B 0.0000 Buried
214 N B -2.1383 Soluble
215 H B 0.0000 Buried
216 K B -2.8552 Soluble
217 P B -1.5924 Soluble
218 S B -1.8286 Soluble
219 N B -2.6578 Soluble
220 T B -2.0849 Soluble
221 K B -2.6899 Soluble
222 V B -1.4035 Soluble
223 D B -2.3229 Soluble
224 K B -2.0287 Soluble
225 R B -2.2492 Soluble
226 V B 0.0000 Buried
227 E B -2.5124 Soluble
228 P B -1.7874 Soluble
229 K B -2.2762 Soluble
230 S B -1.5150 Soluble
1 D A -1.4924 Soluble
2 I A 0.0000 Buried
3 L A 0.5892 Aggregation-prone
4 L A 0.0000 Buried
5 T A -0.3637 Soluble
6 Q A 0.0000 Buried
7 S A 0.0819 Aggregation-prone
8 P A 0.7419 Aggregation-prone
9 V A 1.7637 Aggregation-prone
10 I A 1.1788 Aggregation-prone
11 L A 0.5154 Aggregation-prone
12 S A -0.1960 Soluble
13 V A -1.1794 Soluble
14 S A -1.8145 Soluble
15 P A -2.0419 Soluble
16 G A -2.1952 Soluble
17 E A -3.0963 Soluble
18 R A -3.3120 Soluble
19 V A 0.0000 Buried
20 S A -0.9454 Soluble
21 F A 0.0000 Buried
22 S A -0.8674 Soluble
23 C A 0.0000 Buried
24 R A -2.5440 Soluble
25 A A 0.0000 Buried
26 S A -1.0692 Soluble
27 Q A -1.9524 Soluble
28 S A -1.6771 Soluble
29 I A 0.0000 Buried
36 G A -1.0574 Soluble
37 T A -0.7617 Soluble
38 N A -0.8142 Soluble
39 I A 0.0000 Buried
40 H A 0.0000 Buried
41 W A 0.0000 Buried
42 Y A 0.0000 Buried
43 Q A 0.0000 Buried
44 Q A -1.1220 Soluble
45 R A -1.7764 Soluble
46 T A -1.6067 Soluble
47 N A -1.7436 Soluble
48 G A -1.4024 Soluble
49 S A -0.9225 Soluble
50 P A 0.0000 Buried
51 R A -0.6239 Soluble
52 L A 0.0000 Buried
53 L A 0.0000 Buried
54 I A 0.0000 Buried
55 K A -0.7718 Soluble
56 Y A -0.5677 Soluble
57 A A 0.0000 Buried
65 S A -1.2944 Soluble
66 E A -2.0178 Soluble
67 S A -1.2069 Soluble
68 I A -0.5333 Soluble
69 S A -0.3425 Soluble
70 G A -0.4747 Soluble
71 I A -0.2633 Soluble
72 P A -0.3404 Soluble
74 S A -0.5876 Soluble
75 R A -1.1163 Soluble
76 F A 0.0000 Buried
77 S A -0.9430 Soluble
78 G A -0.7706 Soluble
79 S A -0.8701 Soluble
80 G A -1.1267 Soluble
83 S A -0.9317 Soluble
84 G A -1.3817 Soluble
85 T A -1.9850 Soluble
86 D A -2.6632 Soluble
87 F A 0.0000 Buried
88 T A -0.9246 Soluble
89 L A 0.0000 Buried
90 S A -0.9309 Soluble
91 I A 0.0000 Buried
92 N A -2.4784 Soluble
93 S A -2.4025 Soluble
94 V A 0.0000 Buried
95 E A -2.3207 Soluble
96 S A -2.1177 Soluble
97 E A -2.0434 Soluble
98 D A 0.0000 Buried
99 I A 0.0000 Buried
100 A A -1.2430 Soluble
101 D A -0.6922 Soluble
102 Y A 0.0000 Buried
103 Y A 0.0000 Buried
104 C A 0.0000 Buried
105 Q A 0.0000 Buried
106 Q A 0.0000 Buried
107 N A -0.6809 Soluble
108 N A -1.4347 Soluble
109 N A -1.3052 Soluble
114 W A 0.0438 Aggregation-prone
115 P A -0.3309 Soluble
116 T A 0.0000 Buried
117 T A -0.1874 Soluble
118 F A 0.2567 Aggregation-prone
119 G A 0.0000 Buried
120 A A -0.2570 Soluble
121 G A -0.2275 Soluble
122 T A 0.0000 Buried
123 K A -0.7320 Soluble
124 L A 0.0000 Buried
125 E A -1.0106 Soluble
126 L A 0.0000 Buried
127 K A -1.7634 Soluble
128 R A -1.3697 Soluble
129 T A -0.2426 Soluble
130 V A 0.3092 Aggregation-prone
131 A A 0.1538 Aggregation-prone
132 A A -0.0290 Soluble
133 P A 0.0000 Buried
134 S A -0.1554 Soluble
135 V A 0.0000 Buried
136 F A 0.0000 Buried
137 I A 0.0000 Buried
138 F A 0.0000 Buried
139 P A -0.5162 Soluble
140 P A -0.8809 Soluble
141 S A -1.9496 Soluble
142 D A -3.0923 Soluble
143 E A -3.2498 Soluble
144 Q A 0.0000 Buried
145 L A -2.4329 Soluble
146 K A -2.9344 Soluble
147 S A -1.8445 Soluble
148 G A -1.3379 Soluble
149 T A -0.9120 Soluble
150 A A 0.0000 Buried
151 S A 0.0000 Buried
152 V A 0.0000 Buried
153 V A 0.0000 Buried
154 C A 0.0000 Buried
155 L A 0.0000 Buried
156 L A 0.0000 Buried
157 N A 0.0000 Buried
158 N A -0.6744 Soluble
159 F A 0.0000 Buried
160 Y A -0.9168 Soluble
161 P A -1.4243 Soluble
162 R A -2.3941 Soluble
163 E A -2.8898 Soluble
164 A A -2.1885 Soluble
165 K A -2.3659 Soluble
166 V A -1.0931 Soluble
167 Q A -0.5854 Soluble
168 W A 0.0000 Buried
169 K A -0.6292 Soluble
170 V A 0.0000 Buried
171 D A -1.9440 Soluble
172 N A -1.5836 Soluble
173 A A -0.3243 Soluble
174 L A 0.6243 Aggregation-prone
175 Q A -0.3623 Soluble
176 S A -0.6879 Soluble
177 G A -1.3672 Soluble
178 N A -1.7669 Soluble
179 S A -1.6347 Soluble
180 Q A -1.6779 Soluble
181 E A -1.9748 Soluble
182 S A -0.9955 Soluble
183 V A -0.8292 Soluble
184 T A -1.0560 Soluble
185 E A -2.2114 Soluble
186 Q A 0.0000 Buried
187 D A -2.1110 Soluble
188 S A -2.2770 Soluble
189 K A -2.5724 Soluble
190 D A -1.7815 Soluble
191 S A 0.0000 Buried
192 T A 0.0000 Buried
193 Y A 0.0000 Buried
194 S A 0.0000 Buried
195 L A 0.0000 Buried
196 S A 0.0000 Buried
197 S A 0.0000 Buried
198 T A -0.8391 Soluble
199 L A 0.0000 Buried
200 T A -0.7106 Soluble
201 L A -0.8309 Soluble
202 S A -1.0051 Soluble
203 K A -2.0264 Soluble
204 A A -1.7925 Soluble
205 D A -2.3866 Soluble
206 Y A 0.0000 Buried
207 E A -3.2405 Soluble
208 K A -3.4572 Soluble
209 H A -2.8181 Soluble
210 K A -2.3768 Soluble
211 V A -0.8874 Soluble
212 Y A 0.0000 Buried
213 A A -0.7013 Soluble
214 C A 0.0000 Buried
215 E A -0.9004 Soluble
216 V A 0.0000 Buried
217 T A -1.2025 Soluble
218 H A 0.0000 Buried
219 Q A -1.6900 Soluble
220 G A -0.4401 Soluble
221 L A -0.2325 Soluble
222 S A -0.4473 Soluble
223 S A -0.4252 Soluble
224 P A -0.5332 Soluble
225 V A 0.0051 Aggregation-prone
226 T A -0.5050 Soluble
227 K A -1.0033 Soluble
228 S A -0.7531 Soluble
229 F A -0.7563 Soluble
230 N A -1.1549 Soluble
231 R A -1.7424 Soluble
232 G A -1.1201 Soluble
233 A A -0.5655 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
Load structure to view sequence…
Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.712 2.8005 CSV PDB
4.5 -0.7494 2.7513 CSV PDB
5.0 -0.7938 2.6814 CSV PDB
5.5 -0.8358 2.6004 CSV PDB
6.0 -0.8644 2.515 CSV PDB
6.5 -0.8708 2.4282 CSV PDB
7.0 -0.8549 2.3409 CSV PDB
7.5 -0.8243 2.2539 CSV PDB
8.0 -0.7858 2.1917 CSV PDB
8.5 -0.742 2.1897 CSV PDB
9.0 -0.6931 2.1835 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH