Amatuximab / 4f33

A4DAB011_4f33_F_E | Source PDB: 4f33 | Chains: F, E | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.676
Max Score
1.3234
Min Score
-3.5648
Total Score
-290.02
Score CDR
-0.2848
Score non-CDR
-0.7219

Calculation Parameters

Chain Sequence(s) VQLQQSGPELEKPGASVKISCKASGYSFTGYTMNWVKQSHGKSLEWIGLITPYNGASSYNQKFRGKATLTVDKSSSTAYMDLLSLTSEDSAVYFCARGGYDGRGFDYWGSGTPVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKDIELTQSPAIMSASPGEKVTMTCSASSSVSYMHWYQQKSGTSPKRWIYDTSKLASGVPGRFSGSGSGNSYSLTISSVEAEDDATYYCQQWSKHPLTFGSGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG input.pdb
Selected Chain(s) F (Heavy), E (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.5648
Maximum Score 1.3234
Average Score -0.676
Total Score -290.0189

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
2 V F 0.5784 Aggregation-prone
3 Q F -1.0093 Soluble
4 L F 0.0000 Buried
5 Q F -1.7620 Soluble
6 Q F 0.0000 Buried
7 S F -0.8290 Soluble
8 G F -0.7989 Soluble
9 P F -0.7098 Soluble
11 E F -0.9574 Soluble
12 L F -0.6305 Soluble
13 E F -1.4150 Soluble
14 K F -2.2061 Soluble
15 P F -1.5689 Soluble
16 G F -1.1007 Soluble
17 A F -0.8400 Soluble
18 S F -0.7826 Soluble
19 V F -0.9856 Soluble
20 K F -1.6818 Soluble
21 I F 0.0000 Buried
22 S F -0.8142 Soluble
23 C F 0.0000 Buried
24 K F -1.8143 Soluble
25 A F 0.0000 Buried
26 S F -0.7430 Soluble
27 G F -0.2137 Soluble
28 Y F 0.0054 Aggregation-prone
29 S F -0.1398 Soluble
30 F F 0.0000 Buried
35 T F -0.0785 Soluble
36 G F 0.1830 Aggregation-prone
37 Y F 0.3374 Aggregation-prone
38 T F 0.0000 Buried
39 M F 0.0000 Buried
40 N F 0.0000 Buried
41 W F 0.0000 Buried
42 V F 0.0000 Buried
43 K F -0.6183 Soluble
44 Q F 0.0000 Buried
45 S F -1.5171 Soluble
46 H F -1.7924 Soluble
47 G F -1.8741 Soluble
48 K F -2.5085 Soluble
49 S F -1.5674 Soluble
50 L F 0.0000 Buried
51 E F -0.9210 Soluble
52 W F 0.0000 Buried
53 I F 0.0000 Buried
54 G F 0.0000 Buried
55 L F 0.2201 Aggregation-prone
56 I F 0.0000 Buried
57 T F 0.1948 Aggregation-prone
58 P F 0.0000 Buried
59 Y F 0.4267 Aggregation-prone
62 N F -0.8566 Soluble
63 G F -0.6674 Soluble
64 A F -0.2550 Soluble
65 S F -0.2268 Soluble
66 S F -0.4893 Soluble
67 Y F -1.1670 Soluble
68 N F 0.0000 Buried
69 Q F -2.8328 Soluble
70 K F -2.9332 Soluble
71 F F 0.0000 Buried
72 R F -3.0308 Soluble
74 G F -1.8344 Soluble
75 K F -1.4127 Soluble
76 A F 0.0000 Buried
77 T F -0.6982 Soluble
78 L F 0.0000 Buried
79 T F -0.2247 Soluble
80 V F -0.6718 Soluble
81 D F -1.5648 Soluble
82 K F -1.7495 Soluble
83 S F -1.1558 Soluble
84 S F -1.1302 Soluble
85 S F -1.2120 Soluble
86 T F -1.2109 Soluble
87 A F 0.0000 Buried
88 Y F -0.4625 Soluble
89 M F 0.0000 Buried
90 D F -0.8887 Soluble
91 L F 0.0000 Buried
92 L F -0.1036 Soluble
93 S F -0.4833 Soluble
94 L F 0.0000 Buried
95 T F -1.2470 Soluble
96 S F -1.5107 Soluble
97 E F -1.9775 Soluble
98 D F 0.0000 Buried
99 S F -0.8552 Soluble
100 A F -0.6889 Soluble
101 V F 0.1099 Aggregation-prone
102 Y F 0.0000 Buried
103 F F 0.0000 Buried
104 C F 0.0000 Buried
105 A F 0.0000 Buried
106 R F 0.0000 Buried
107 G F 0.0000 Buried
108 G F -0.1738 Soluble
109 Y F 0.3137 Aggregation-prone
110 D F -1.3082 Soluble
112 G F -0.4966 Soluble
113 R F -0.7466 Soluble
114 G F -0.1168 Soluble
115 F F 0.0000 Buried
116 D F -0.0458 Soluble
117 Y F 0.4378 Aggregation-prone
118 W F -0.0627 Soluble
119 G F 0.0000 Buried
120 S F -0.6084 Soluble
121 G F -0.3016 Soluble
122 T F 0.0000 Buried
123 P F -0.1189 Soluble
124 V F 0.0000 Buried
125 T F -0.7509 Soluble
126 V F 0.0000 Buried
127 S F -0.9699 Soluble
128 S F -1.0403 Soluble
129 A F -0.6114 Soluble
130 S F -0.7174 Soluble
131 T F -0.8341 Soluble
132 K F -1.1962 Soluble
133 G F -1.4746 Soluble
134 P F -0.6961 Soluble
135 S F -0.2597 Soluble
136 V F 0.0000 Buried
137 F F 0.0000 Buried
138 P F -1.2676 Soluble
139 L F 0.0000 Buried
140 A F -1.3366 Soluble
141 P F 0.0000 Buried
142 S F -1.2565 Soluble
143 S F -0.9934 Soluble
144 K F -1.2465 Soluble
145 S F 0.0000 Buried
146 T F -0.7878 Soluble
147 S F -0.8624 Soluble
148 G F -0.8539 Soluble
149 G F -0.9208 Soluble
150 T F -0.6411 Soluble
151 A F 0.0000 Buried
152 A F 0.0000 Buried
153 L F 0.0000 Buried
154 G F 0.0000 Buried
156 L F 0.0000 Buried
157 V F 0.0000 Buried
158 K F 0.0000 Buried
159 D F -0.3613 Soluble
160 Y F 0.0000 Buried
161 F F 0.0000 Buried
162 P F 0.0000 Buried
163 E F -0.5909 Soluble
164 P F -0.8726 Soluble
165 V F -0.9157 Soluble
166 T F -0.8337 Soluble
167 V F -0.5669 Soluble
168 S F -0.4984 Soluble
169 W F 0.0000 Buried
170 N F -0.7100 Soluble
171 S F -0.6416 Soluble
172 G F -0.5876 Soluble
173 A F -0.2612 Soluble
174 L F -0.0218 Soluble
175 T F -0.1995 Soluble
176 S F -0.2063 Soluble
177 G F -0.2450 Soluble
178 V F 0.1309 Aggregation-prone
179 H F -0.3265 Soluble
180 T F -0.0223 Soluble
181 F F 0.0000 Buried
182 P F -0.2844 Soluble
183 A F 0.2964 Aggregation-prone
184 V F 0.6952 Aggregation-prone
185 L F 1.2908 Aggregation-prone
186 Q F 0.3681 Aggregation-prone
187 S F -0.0781 Soluble
188 S F -0.2022 Soluble
189 G F 0.0447 Aggregation-prone
190 L F 0.2239 Aggregation-prone
191 Y F 0.5032 Aggregation-prone
192 S F 0.0000 Buried
193 L F 0.0000 Buried
194 S F 0.0000 Buried
195 S F 0.0000 Buried
196 V F 0.0000 Buried
197 V F 0.0000 Buried
198 T F -0.1350 Soluble
199 V F 0.0000 Buried
200 P F -0.6333 Soluble
201 S F -0.6106 Soluble
202 S F -0.5866 Soluble
203 S F -0.6157 Soluble
204 L F -0.7772 Soluble
205 G F -0.9469 Soluble
206 T F -0.6985 Soluble
207 Q F -1.1742 Soluble
208 T F -1.0436 Soluble
209 Y F 0.0000 Buried
210 I F -1.0518 Soluble
211 C F 0.0000 Buried
212 N F -1.5849 Soluble
213 V F 0.0000 Buried
214 N F -2.6822 Soluble
215 H F 0.0000 Buried
216 K F -3.0361 Soluble
217 P F -1.7663 Soluble
218 S F -1.9419 Soluble
219 N F -2.6524 Soluble
220 T F -2.3066 Soluble
221 K F -2.9717 Soluble
222 V F -1.5842 Soluble
223 D F -2.3954 Soluble
224 K F -1.7852 Soluble
225 K F -2.2941 Soluble
226 V F 0.0000 Buried
227 E F -2.7737 Soluble
228 P F -1.9256 Soluble
229 K F -2.2713 Soluble
1 D E -2.8263 Soluble
2 I E 0.0000 Buried
3 E E -2.4453 Soluble
4 L E 0.0000 Buried
5 T E -0.6934 Soluble
6 Q E 0.0000 Buried
7 S E -0.0610 Soluble
8 P E 0.2366 Aggregation-prone
9 A E 0.5241 Aggregation-prone
10 I E 1.3234 Aggregation-prone
11 M E 0.4768 Aggregation-prone
12 S E -0.2644 Soluble
13 A E 0.0000 Buried
14 S E -1.6404 Soluble
15 P E -2.0047 Soluble
16 G E -1.8288 Soluble
17 E E -2.3013 Soluble
18 K E -2.3566 Soluble
19 V E -0.9963 Soluble
20 T E -0.3928 Soluble
21 M E 0.0000 Buried
22 T E -0.2404 Soluble
23 C E 0.0000 Buried
24 S E -0.8231 Soluble
25 A E 0.0000 Buried
26 S E -1.3918 Soluble
27 S E -1.3764 Soluble
28 S E -1.0276 Soluble
29 V E 0.0000 Buried
37 S E 0.1812 Aggregation-prone
38 Y E 0.9246 Aggregation-prone
39 M E 0.0000 Buried
40 H E 0.0000 Buried
41 W E 0.0000 Buried
42 Y E 0.0000 Buried
43 Q E 0.0000 Buried
44 Q E -0.9650 Soluble
45 K E -1.1737 Soluble
46 S E -1.2117 Soluble
47 G E -0.9843 Soluble
48 T E -0.6457 Soluble
49 S E -0.4894 Soluble
50 P E 0.0000 Buried
51 K E -0.9654 Soluble
52 R E -0.5430 Soluble
53 W E 0.0000 Buried
54 I E 0.0000 Buried
55 Y E -0.1010 Soluble
56 D E 0.0000 Buried
57 T E -0.0239 Soluble
65 S E -0.6155 Soluble
66 K E -1.0405 Soluble
67 L E -0.3291 Soluble
68 A E -0.4561 Soluble
69 S E -0.4573 Soluble
70 G E -0.4722 Soluble
71 V E -0.4381 Soluble
72 P E -0.3898 Soluble
74 G E -0.6470 Soluble
75 R E -1.0542 Soluble
76 F E 0.0000 Buried
77 S E -0.6182 Soluble
78 G E -0.4165 Soluble
79 S E -0.5314 Soluble
80 G E -0.5794 Soluble
83 S E -0.6370 Soluble
84 G E -0.9581 Soluble
85 N E -1.1758 Soluble
86 S E -0.8369 Soluble
87 Y E 0.0000 Buried
88 S E -0.3547 Soluble
89 L E 0.0000 Buried
90 T E -0.5383 Soluble
91 I E 0.0000 Buried
92 S E -1.5295 Soluble
93 S E -1.8738 Soluble
94 V E 0.0000 Buried
95 E E -2.6237 Soluble
96 A E -2.4164 Soluble
97 E E -2.5100 Soluble
98 D E 0.0000 Buried
99 D E 0.0000 Buried
100 A E 0.0000 Buried
101 T E -0.5765 Soluble
102 Y E 0.0000 Buried
103 Y E 0.0000 Buried
104 C E 0.0000 Buried
105 Q E 0.0000 Buried
106 Q E 0.0000 Buried
107 W E -0.0826 Soluble
108 S E -0.7514 Soluble
109 K E -2.4075 Soluble
114 H E -2.1708 Soluble
115 P E 0.0000 Buried
116 L E -0.9436 Soluble
117 T E -1.0950 Soluble
118 F E 0.0000 Buried
119 G E 0.0000 Buried
120 S E -0.9168 Soluble
121 G E 0.0000 Buried
122 T E 0.0000 Buried
123 K E -0.3467 Soluble
124 V E 0.0000 Buried
125 E E -0.7802 Soluble
126 I E 0.0000 Buried
127 K E -1.4376 Soluble
128 R E -1.0585 Soluble
129 T E -0.0252 Soluble
130 V E 0.6111 Aggregation-prone
131 A E 0.1013 Aggregation-prone
132 A E -0.0484 Soluble
133 P E 0.0000 Buried
134 S E -0.2314 Soluble
135 V E 0.0000 Buried
136 F E 0.0000 Buried
137 I E 0.0000 Buried
138 F E 0.0000 Buried
139 P E -0.8065 Soluble
140 P E -0.9190 Soluble
141 S E -1.9158 Soluble
142 D E -3.0723 Soluble
143 E E -3.1882 Soluble
144 Q E 0.0000 Buried
145 L E -2.4049 Soluble
146 K E -2.9590 Soluble
147 S E -1.8047 Soluble
148 G E -1.4011 Soluble
149 T E -1.0671 Soluble
150 A E 0.0000 Buried
151 S E 0.0000 Buried
152 V E 0.0000 Buried
153 V E 0.0000 Buried
154 C E 0.0000 Buried
155 L E 0.0000 Buried
156 L E 0.0000 Buried
157 N E 0.0000 Buried
158 N E -0.8382 Soluble
159 F E 0.0000 Buried
160 Y E 0.0000 Buried
161 P E -1.2968 Soluble
162 R E -2.2242 Soluble
163 E E -2.8058 Soluble
164 A E -2.1181 Soluble
165 K E -2.5306 Soluble
166 V E 0.0000 Buried
167 Q E -1.0666 Soluble
168 W E 0.0000 Buried
169 K E -0.7850 Soluble
170 V E 0.0000 Buried
171 D E -2.1275 Soluble
172 N E -1.6587 Soluble
173 A E -0.4818 Soluble
174 L E 0.2210 Aggregation-prone
175 Q E -0.3435 Soluble
176 S E -0.5343 Soluble
177 G E -0.8578 Soluble
178 N E -0.7727 Soluble
179 S E -1.0050 Soluble
180 Q E -1.0096 Soluble
181 E E -1.5447 Soluble
182 S E -0.7037 Soluble
183 V E -0.7449 Soluble
184 T E -0.9718 Soluble
185 E E -1.9190 Soluble
186 Q E 0.0000 Buried
187 D E -2.0882 Soluble
188 S E -2.3264 Soluble
189 K E -2.7032 Soluble
190 D E -1.8976 Soluble
191 S E 0.0000 Buried
192 T E 0.0000 Buried
193 Y E 0.0000 Buried
194 S E 0.0000 Buried
195 L E 0.0000 Buried
196 S E 0.0000 Buried
197 S E 0.0000 Buried
198 T E -0.4925 Soluble
199 L E 0.0000 Buried
200 T E -0.4148 Soluble
201 L E -0.6511 Soluble
202 S E -1.2677 Soluble
203 K E -2.2211 Soluble
204 A E -1.8804 Soluble
205 D E -2.5286 Soluble
206 Y E 0.0000 Buried
207 E E -3.4172 Soluble
208 K E -3.5648 Soluble
209 H E -2.9735 Soluble
210 K E -3.3239 Soluble
211 V E -1.8014 Soluble
212 Y E 0.0000 Buried
213 A E 0.0000 Buried
214 C E 0.0000 Buried
215 E E -1.0376 Soluble
216 V E 0.0000 Buried
217 T E -1.2218 Soluble
218 H E 0.0000 Buried
219 Q E -1.6912 Soluble
220 G E -0.4962 Soluble
221 L E -0.2627 Soluble
222 S E -0.4810 Soluble
223 S E -0.4322 Soluble
224 P E -0.4836 Soluble
225 V E -0.0329 Soluble
226 T E -0.4870 Soluble
227 K E -0.8063 Soluble
228 S E -0.8168 Soluble
229 F E 0.0000 Buried
230 N E -2.2987 Soluble
231 R E -2.5074 Soluble
232 G E -1.5585 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
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Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.8378 2.1593 CSV PDB
4.5 -0.8761 2.1515 CSV PDB
5.0 -0.9204 2.1434 CSV PDB
5.5 -0.9593 2.1404 CSV PDB
6.0 -0.9795 2.1523 CSV PDB
6.5 -0.9714 2.1916 CSV PDB
7.0 -0.9364 2.2606 CSV PDB
7.5 -0.8843 2.3485 CSV PDB
8.0 -0.8237 2.4446 CSV PDB
8.5 -0.7577 2.5434 CSV PDB
9.0 -0.6873 2.6427 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH