Zenocutuzumab / 5o4o

A4DAB306_5o4o_B_A | Source PDB: 5o4o | Chains: B, A | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.6755
Max Score
1.9124
Min Score
-3.483
Total Score
-289.81
Score CDR
-0.1851
Score non-CDR
-0.7417

Calculation Parameters

Chain Sequence(s) QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDHGSRHFWSYWGFDYWGQGTLVTVSSASTKGPSVFPLAPTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPDIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE input.pdb
Selected Chain(s) B (Heavy), A (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.483
Maximum Score 1.9124
Average Score -0.6755
Total Score -289.8068

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
1 Q B -1.4563 Soluble
2 V B -0.8659 Soluble
3 Q B -1.2286 Soluble
4 L B 0.0000 Buried
5 V B -0.2040 Soluble
6 Q B 0.0000 Buried
7 S B -0.6547 Soluble
8 G B -0.5920 Soluble
9 A B -0.1229 Soluble
11 E B -0.3344 Soluble
12 V B 0.1915 Aggregation-prone
13 K B -1.2438 Soluble
14 K B -2.2954 Soluble
15 P B -2.5782 Soluble
16 G B -2.2224 Soluble
17 A B -1.5487 Soluble
18 S B -1.7278 Soluble
19 V B 0.0000 Buried
20 K B -2.1306 Soluble
21 V B 0.0000 Buried
22 S B -0.7880 Soluble
23 C B 0.0000 Buried
24 K B -0.6230 Soluble
25 A B 0.0000 Buried
26 S B -0.6310 Soluble
27 G B -0.9907 Soluble
28 Y B -0.3583 Soluble
29 T B -0.0784 Soluble
30 F B 0.0000 Buried
35 T B -0.6566 Soluble
36 G B -0.6370 Soluble
37 Y B -0.3849 Soluble
38 Y B -0.2855 Soluble
39 M B 0.0000 Buried
40 H B 0.0000 Buried
41 W B 0.0000 Buried
42 V B 0.0000 Buried
43 R B 0.0000 Buried
44 Q B -0.5121 Soluble
45 A B -0.9314 Soluble
46 P B -0.8319 Soluble
47 G B -1.2864 Soluble
48 Q B -1.8254 Soluble
49 G B -1.2902 Soluble
50 L B -0.6640 Soluble
51 E B -0.5489 Soluble
52 W B 0.0000 Buried
53 M B 0.0000 Buried
54 G B 0.0000 Buried
55 W B 0.0165 Aggregation-prone
56 I B 0.0000 Buried
57 N B -0.8728 Soluble
58 P B 0.0000 Buried
59 N B -1.6594 Soluble
62 S B -1.1605 Soluble
63 G B -1.0749 Soluble
64 G B -0.8189 Soluble
65 T B -0.3252 Soluble
66 N B -0.5497 Soluble
67 Y B -0.9510 Soluble
68 A B 0.0000 Buried
69 Q B -2.5161 Soluble
70 K B -2.6990 Soluble
71 F B 0.0000 Buried
72 Q B -2.4138 Soluble
74 G B -1.8074 Soluble
75 R B -1.7001 Soluble
76 V B 0.0000 Buried
77 T B -0.8518 Soluble
78 M B 0.0000 Buried
79 T B -0.6488 Soluble
80 R B -1.0117 Soluble
81 D B -0.7380 Soluble
82 T B -0.3297 Soluble
83 S B 0.2425 Aggregation-prone
84 I B 0.9727 Aggregation-prone
85 S B 0.0668 Aggregation-prone
86 T B 0.0000 Buried
87 A B 0.0000 Buried
88 Y B -0.8423 Soluble
89 M B 0.0000 Buried
90 E B -1.9327 Soluble
91 L B 0.0000 Buried
92 S B -1.9677 Soluble
93 R B -2.7177 Soluble
94 L B 0.0000 Buried
95 R B -3.4605 Soluble
96 S B -2.3970 Soluble
97 D B -2.5050 Soluble
98 D B 0.0000 Buried
99 T B -0.8198 Soluble
100 A B 0.0000 Buried
101 V B 0.2976 Aggregation-prone
102 Y B 0.0000 Buried
103 Y B 0.0000 Buried
104 C B 0.0000 Buried
105 A B 0.0000 Buried
106 R B 0.0000 Buried
107 D B 0.0000 Buried
108 H B -0.3307 Soluble
109 G B -0.2833 Soluble
110 S B -0.7419 Soluble
111 R B -1.1168 Soluble
111A H B 0.2656 Aggregation-prone
111B F B 1.9124 Aggregation-prone
112B W B 1.5933 Aggregation-prone
112A S B 0.0000 Buried
112 Y B 1.0895 Aggregation-prone
113 W B 0.7195 Aggregation-prone
114 G B 0.0000 Buried
115 F B 0.0000 Buried
116 D B -0.3712 Soluble
117 Y B -0.0208 Soluble
118 W B -0.3781 Soluble
119 G B 0.0000 Buried
120 Q B -1.3909 Soluble
121 G B -0.7234 Soluble
122 T B 0.0000 Buried
123 L B 0.2142 Aggregation-prone
124 V B 0.0000 Buried
125 T B 0.0000 Buried
126 V B 0.0000 Buried
127 S B -1.3276 Soluble
128 S B -1.2482 Soluble
129 A B -0.7354 Soluble
130 S B -0.6854 Soluble
131 T B -0.5713 Soluble
132 K B -1.2088 Soluble
133 G B -1.3452 Soluble
134 P B 0.0000 Buried
135 S B -0.4065 Soluble
136 V B 0.0000 Buried
137 F B 0.0000 Buried
138 P B -1.2233 Soluble
139 L B 0.0000 Buried
140 A B -0.8764 Soluble
141 P B -0.4847 Soluble
142 T B -0.2509 Soluble
143 A B 0.0000 Buried
144 A B 0.0000 Buried
145 L B 0.0000 Buried
146 G B 0.0000 Buried
147 C B 0.0000 Buried
148 L B 0.0000 Buried
149 V B 0.0000 Buried
150 K B 0.0000 Buried
151 D B -0.6463 Soluble
152 Y B 0.0000 Buried
153 F B 0.0000 Buried
154 P B 0.0000 Buried
155 E B -0.8776 Soluble
156 P B -0.9739 Soluble
157 V B -0.8146 Soluble
158 T B -0.6380 Soluble
159 V B -0.2243 Soluble
160 S B -0.3776 Soluble
161 W B 0.0000 Buried
162 N B -0.7586 Soluble
163 S B -0.6296 Soluble
164 G B -0.4066 Soluble
165 A B -0.1780 Soluble
166 L B -0.0116 Soluble
167 T B -0.1803 Soluble
168 S B -0.2430 Soluble
169 G B -0.3428 Soluble
170 V B 0.0871 Aggregation-prone
171 H B -0.2324 Soluble
172 T B -0.0301 Soluble
173 F B 0.0000 Buried
174 P B -0.3089 Soluble
175 A B 0.0888 Aggregation-prone
176 V B 0.3390 Aggregation-prone
177 L B 0.9312 Aggregation-prone
178 Q B 0.0953 Aggregation-prone
179 S B -0.1107 Soluble
180 S B -0.2759 Soluble
181 G B -0.0853 Soluble
182 L B -0.1146 Soluble
183 Y B 0.0000 Buried
184 S B 0.0000 Buried
185 L B 0.0000 Buried
186 S B 0.0000 Buried
187 S B 0.0000 Buried
188 V B 0.0000 Buried
189 V B 0.0000 Buried
190 T B -0.1790 Soluble
191 V B 0.0000 Buried
192 P B -0.3853 Soluble
193 S B -0.4483 Soluble
194 S B -0.5499 Soluble
195 S B -0.6469 Soluble
196 L B -0.7841 Soluble
197 G B -1.1695 Soluble
198 T B -0.8512 Soluble
199 Q B -1.4774 Soluble
200 T B -1.3486 Soluble
201 Y B 0.0000 Buried
202 I B -1.5162 Soluble
203 C B 0.0000 Buried
204 N B -1.4988 Soluble
205 V B 0.0000 Buried
206 N B -1.9703 Soluble
207 H B 0.0000 Buried
208 K B -2.7682 Soluble
209 P B -1.5503 Soluble
210 S B -1.7915 Soluble
211 N B -2.5182 Soluble
212 T B -2.0224 Soluble
213 K B -2.6464 Soluble
214 V B -1.5181 Soluble
215 D B -2.5447 Soluble
216 K B -2.0467 Soluble
217 R B -2.8146 Soluble
218 V B 0.0000 Buried
219 E B -2.6199 Soluble
220 P B -1.4114 Soluble
1 D A -2.2971 Soluble
2 I A 0.0000 Buried
3 Q A -2.2839 Soluble
4 M A 0.0000 Buried
5 T A -1.4159 Soluble
6 Q A 0.0000 Buried
7 S A -0.7293 Soluble
8 P A -0.7066 Soluble
9 S A -1.0104 Soluble
10 S A -1.0033 Soluble
11 L A -0.8103 Soluble
12 S A -1.0686 Soluble
13 A A 0.0000 Buried
14 S A -0.5428 Soluble
15 V A 0.3549 Aggregation-prone
16 G A -0.6785 Soluble
17 D A -1.5070 Soluble
18 R A -2.2581 Soluble
19 V A 0.0000 Buried
20 T A -0.5643 Soluble
21 I A 0.0000 Buried
22 T A -0.7892 Soluble
23 C A 0.0000 Buried
24 R A -2.3803 Soluble
25 A A 0.0000 Buried
26 S A -1.8391 Soluble
27 Q A -1.8034 Soluble
28 S A -0.9894 Soluble
29 I A 0.0000 Buried
36 S A -0.1915 Soluble
37 S A 0.0229 Aggregation-prone
38 Y A 0.6068 Aggregation-prone
39 L A 0.0000 Buried
40 N A 0.0000 Buried
41 W A 0.0000 Buried
42 Y A 0.0000 Buried
43 Q A 0.0000 Buried
44 Q A 0.0000 Buried
45 K A -1.6709 Soluble
46 P A -1.4861 Soluble
47 G A -1.7367 Soluble
48 K A -2.5563 Soluble
49 A A -1.5481 Soluble
50 P A 0.0000 Buried
51 K A -1.6593 Soluble
52 L A 0.0000 Buried
53 L A 0.0000 Buried
54 I A 0.0000 Buried
55 Y A 0.3225 Aggregation-prone
56 A A 0.2038 Aggregation-prone
57 A A 0.0000 Buried
65 S A -0.2350 Soluble
66 S A 0.0546 Aggregation-prone
67 L A 0.2567 Aggregation-prone
68 Q A -0.3196 Soluble
69 S A -0.4232 Soluble
70 G A -0.5035 Soluble
71 V A -0.3947 Soluble
72 P A -0.3712 Soluble
74 S A -0.4831 Soluble
75 R A -0.8526 Soluble
76 F A 0.0000 Buried
77 S A -0.2993 Soluble
78 G A -0.2869 Soluble
79 S A -0.6933 Soluble
80 G A -0.9037 Soluble
83 S A -0.8091 Soluble
84 G A -1.0435 Soluble
85 T A -1.5694 Soluble
86 D A -2.0251 Soluble
87 F A 0.0000 Buried
88 T A -0.7345 Soluble
89 L A 0.0000 Buried
90 T A -0.5913 Soluble
91 I A 0.0000 Buried
92 S A -1.3651 Soluble
93 S A -1.1157 Soluble
94 L A 0.0000 Buried
95 Q A -0.9068 Soluble
96 P A -0.9266 Soluble
97 E A -1.9128 Soluble
98 D A 0.0000 Buried
99 F A -0.7267 Soluble
100 A A 0.0000 Buried
101 T A 0.0000 Buried
102 Y A 0.0000 Buried
103 Y A 0.0000 Buried
104 C A 0.0000 Buried
105 Q A 0.0000 Buried
106 Q A 0.0000 Buried
107 S A 0.0000 Buried
108 Y A 0.9489 Aggregation-prone
109 S A 0.0697 Aggregation-prone
114 T A -0.1608 Soluble
115 P A -0.5640 Soluble
116 P A 0.0000 Buried
117 T A -0.7597 Soluble
118 F A 0.0000 Buried
119 G A 0.0000 Buried
120 Q A -1.8221 Soluble
121 G A 0.0000 Buried
122 T A 0.0000 Buried
123 K A -1.9673 Soluble
124 V A 0.0000 Buried
125 E A -1.3661 Soluble
126 I A -0.7237 Soluble
127 K A -1.4979 Soluble
128 R A -1.3155 Soluble
129 T A -0.1219 Soluble
130 V A 0.3696 Aggregation-prone
131 A A 0.1346 Aggregation-prone
132 A A -0.1233 Soluble
133 P A 0.0000 Buried
134 S A -0.1480 Soluble
135 V A 0.0000 Buried
136 F A 0.1869 Aggregation-prone
137 I A 0.1662 Aggregation-prone
138 F A 0.0000 Buried
139 P A -0.5032 Soluble
140 P A 0.0000 Buried
141 S A -1.5809 Soluble
142 D A -2.9173 Soluble
143 E A -2.9450 Soluble
144 Q A 0.0000 Buried
145 L A -2.1774 Soluble
146 K A -2.8021 Soluble
147 S A -1.7355 Soluble
148 G A -1.2081 Soluble
149 T A -0.9660 Soluble
150 A A 0.0000 Buried
151 S A 0.0000 Buried
152 V A 0.0000 Buried
153 V A 0.0000 Buried
154 C A 0.0000 Buried
155 L A 0.0000 Buried
156 L A 0.0000 Buried
157 N A 0.0000 Buried
158 N A -1.2587 Soluble
159 F A 0.0000 Buried
160 Y A 0.0000 Buried
161 P A -1.7047 Soluble
162 R A -2.6870 Soluble
163 E A -2.9936 Soluble
164 A A -1.9970 Soluble
165 K A -1.7792 Soluble
166 V A -0.9406 Soluble
167 Q A -0.7966 Soluble
168 W A 0.0000 Buried
169 K A -0.6825 Soluble
170 V A 0.0000 Buried
171 D A -1.5326 Soluble
172 N A -1.1865 Soluble
173 A A -0.2859 Soluble
174 L A 0.6939 Aggregation-prone
175 Q A -0.4753 Soluble
176 S A -0.8769 Soluble
177 G A -1.3065 Soluble
178 N A -1.5814 Soluble
179 S A -1.6495 Soluble
180 Q A -1.9243 Soluble
181 E A -2.1078 Soluble
182 S A -0.9272 Soluble
183 V A -0.8771 Soluble
184 T A -1.2478 Soluble
185 E A -2.3400 Soluble
186 Q A -2.2444 Soluble
187 D A -2.4958 Soluble
188 S A -2.1335 Soluble
189 K A -2.9348 Soluble
190 D A -3.0193 Soluble
191 S A 0.0000 Buried
192 T A 0.0000 Buried
193 Y A 0.0000 Buried
194 S A 0.0000 Buried
195 L A 0.0000 Buried
196 S A 0.0000 Buried
197 S A 0.0000 Buried
198 T A -0.8395 Soluble
199 L A 0.0000 Buried
200 T A -0.4619 Soluble
201 L A -0.7254 Soluble
202 S A -0.9644 Soluble
203 K A -1.9079 Soluble
204 A A -1.6562 Soluble
205 D A -2.4337 Soluble
206 Y A 0.0000 Buried
207 E A -3.2371 Soluble
208 K A -3.4830 Soluble
209 H A -2.9107 Soluble
210 K A -2.9959 Soluble
211 V A -1.3347 Soluble
212 Y A 0.0000 Buried
213 A A 0.0000 Buried
214 C A 0.0000 Buried
215 E A -1.0148 Soluble
216 V A 0.0000 Buried
217 T A -1.0572 Soluble
218 H A 0.0000 Buried
219 Q A -1.6077 Soluble
220 G A -0.3702 Soluble
221 L A -0.2133 Soluble
222 S A -0.4365 Soluble
223 S A -0.4068 Soluble
224 P A -0.4921 Soluble
225 V A -0.0939 Soluble
226 T A -0.5532 Soluble
227 K A -0.7351 Soluble
228 S A -0.4782 Soluble
229 F A -0.8878 Soluble
230 N A -1.8911 Soluble
231 R A -2.5144 Soluble
232 G A -2.1190 Soluble
233 E A -2.5289 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
Load structure to view sequence…
Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
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pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.7184 4.3877 CSV PDB
4.5 -0.7571 4.3895 CSV PDB
5.0 -0.8015 4.3943 CSV PDB
5.5 -0.8427 4.4056 CSV PDB
6.0 -0.8714 4.4243 CSV PDB
6.5 -0.8796 4.4442 CSV PDB
7.0 -0.8672 4.4576 CSV PDB
7.5 -0.8412 4.4638 CSV PDB
8.0 -0.8075 4.4661 CSV PDB
8.5 -0.7679 4.4668 CSV PDB
9.0 -0.7224 4.4669 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH