Cobolimab / 8gsi

A4DAB068_8gsi_B_A | Source PDB: 8gsi | Chains: B, A | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.708
Max Score
1.6967
Min Score
-3.2238
Total Score
-301.6
Score CDR
-0.5849
Score non-CDR
-0.7207

Calculation Parameters

Chain Sequence(s) VQLLESGGGLVQPGGSLRLSCAAASGFTFSSYDMSWVRQAPGKGLDWVSTISGGGTYTYYQDSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCASMDYWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLTYICNVNHKPSNTKVDKKVEPKSCDIQMTQSPSSLSASVGDRVTITCRASQSIRRYLNWYHQKPGKAPKLLIYGASTLQSGVPSRFSGSGSGTDFTLTISSLQPEDFAVYYCQQSHSAPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC input.pdb
Selected Chain(s) B (Heavy), A (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.2238
Maximum Score 1.6967
Average Score -0.708
Total Score -301.5955

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
2 V B 1.6967 Aggregation-prone
3 Q B 0.5418 Aggregation-prone
4 L B 0.0000 Buried
5 L B 1.2072 Aggregation-prone
6 E B 0.0778 Aggregation-prone
7 S B -0.4772 Soluble
8 G B -0.9781 Soluble
9 G B -0.5063 Soluble
11 G B 0.2417 Aggregation-prone
12 L B 0.6693 Aggregation-prone
13 V B -0.2521 Soluble
14 Q B -1.4474 Soluble
15 P B -1.7480 Soluble
16 G B -1.3956 Soluble
17 G B -0.9777 Soluble
18 S B -1.2432 Soluble
19 L B -0.9665 Soluble
20 R B -2.0520 Soluble
21 L B 0.0000 Buried
22 S B -0.4172 Soluble
23 C B 0.0000 Buried
24 A B -0.0936 Soluble
25 A B -0.1211 Soluble
26 A B 0.0970 Aggregation-prone
27 S B -0.7529 Soluble
28 G B -0.6573 Soluble
29 F B 0.0000 Buried
30 T B -0.4068 Soluble
31 F B 0.0000 Buried
35 S B -1.1888 Soluble
36 S B -0.7481 Soluble
37 Y B -0.8367 Soluble
38 D B -1.6141 Soluble
39 M B 0.0000 Buried
40 S B -0.1750 Soluble
41 W B 0.0000 Buried
42 V B 0.0000 Buried
43 R B 0.0000 Buried
44 Q B -0.7627 Soluble
45 A B -1.1591 Soluble
46 P B -0.8114 Soluble
47 G B -1.4967 Soluble
48 K B -2.2711 Soluble
49 G B -1.3654 Soluble
50 L B 0.0000 Buried
51 D B -0.8735 Soluble
52 W B 0.0000 Buried
53 V B 0.0000 Buried
54 S B 0.0000 Buried
55 T B -0.0263 Soluble
56 I B 0.0000 Buried
57 S B -0.5743 Soluble
58 G B -1.0409 Soluble
59 G B -0.9058 Soluble
62 G B -0.5843 Soluble
63 T B 0.3056 Aggregation-prone
64 Y B 1.0415 Aggregation-prone
65 T B 0.6582 Aggregation-prone
66 Y B 0.4980 Aggregation-prone
67 Y B -0.7467 Soluble
68 Q B -1.4591 Soluble
69 D B -2.5610 Soluble
70 S B -1.7018 Soluble
71 V B 0.0000 Buried
72 K B -2.6354 Soluble
74 G B -1.8337 Soluble
75 R B -1.5968 Soluble
76 F B 0.0000 Buried
77 T B -0.7501 Soluble
78 I B 0.0000 Buried
79 S B -0.2281 Soluble
80 R B -1.0405 Soluble
81 D B -1.6791 Soluble
82 N B -1.7815 Soluble
83 S B -1.5874 Soluble
84 K B -2.3522 Soluble
85 N B -1.6381 Soluble
86 T B -0.9325 Soluble
87 L B 0.0000 Buried
88 Y B -0.3937 Soluble
89 L B 0.0000 Buried
90 Q B -1.1475 Soluble
91 M B 0.0000 Buried
92 N B -1.4497 Soluble
93 S B -1.2655 Soluble
94 L B 0.0000 Buried
95 R B -2.3869 Soluble
96 A B -1.7885 Soluble
97 E B -2.2427 Soluble
98 D B 0.0000 Buried
99 T B -0.6963 Soluble
100 A B 0.0000 Buried
101 V B 0.1520 Aggregation-prone
102 Y B 0.0000 Buried
103 Y B 0.0000 Buried
104 C B 0.0000 Buried
105 A B 0.0000 Buried
106 S B 0.0000 Buried
107 M B 0.0894 Aggregation-prone
116 D B -0.3734 Soluble
117 Y B -0.1203 Soluble
118 W B 0.0000 Buried
119 G B 0.0000 Buried
120 Q B -1.1541 Soluble
121 G B 0.0000 Buried
122 T B -0.1864 Soluble
123 T B -0.0337 Soluble
124 V B 0.0000 Buried
125 T B -0.3514 Soluble
126 V B 0.0000 Buried
127 S B -0.8785 Soluble
128 S B -0.7344 Soluble
129 A B -0.4146 Soluble
130 S B -0.5204 Soluble
131 T B -0.5755 Soluble
132 K B -1.1535 Soluble
133 G B -1.4353 Soluble
134 P B -0.6710 Soluble
135 S B -0.2747 Soluble
136 V B 0.0000 Buried
137 F B -0.6893 Soluble
138 P B -1.0398 Soluble
139 L B 0.0000 Buried
140 A B -1.0713 Soluble
141 P B 0.0000 Buried
142 S B -1.3564 Soluble
143 S B -1.1774 Soluble
144 K B -1.8356 Soluble
145 S B -1.2872 Soluble
146 T B -0.8656 Soluble
147 S B -0.9782 Soluble
148 G B -0.9052 Soluble
149 G B -0.9192 Soluble
150 T B -0.6473 Soluble
151 A B 0.0000 Buried
152 A B 0.0000 Buried
153 L B 0.0000 Buried
154 G B 0.0000 Buried
155 C B 0.0000 Buried
156 L B 0.0000 Buried
157 V B 0.0000 Buried
158 K B -0.2714 Soluble
159 D B -0.4622 Soluble
160 Y B 0.0000 Buried
161 F B 0.0000 Buried
162 P B 0.0000 Buried
163 E B -1.1343 Soluble
164 P B -1.2226 Soluble
165 V B -1.0020 Soluble
166 T B -0.7632 Soluble
167 V B -0.4416 Soluble
168 S B -0.4260 Soluble
169 W B 0.0000 Buried
170 N B -0.7520 Soluble
171 S B -0.6534 Soluble
172 G B -0.5301 Soluble
173 A B -0.2636 Soluble
174 L B 0.0144 Aggregation-prone
175 T B -0.1620 Soluble
176 S B -0.3331 Soluble
177 G B -0.3798 Soluble
178 V B 0.1949 Aggregation-prone
179 H B 0.0000 Buried
180 T B 0.1147 Aggregation-prone
181 F B 0.0000 Buried
182 P B -0.5171 Soluble
183 A B 0.3055 Aggregation-prone
184 V B 0.6303 Aggregation-prone
185 L B 1.3150 Aggregation-prone
186 Q B 0.4063 Aggregation-prone
187 S B 0.0051 Aggregation-prone
188 S B -0.1595 Soluble
189 G B 0.0929 Aggregation-prone
190 L B 0.0228 Aggregation-prone
191 Y B 0.0000 Buried
192 S B 0.0000 Buried
193 L B 0.2948 Aggregation-prone
194 S B 0.0000 Buried
195 S B 0.0000 Buried
196 V B 0.0000 Buried
197 V B 0.0000 Buried
198 T B -0.0985 Soluble
199 V B 0.0000 Buried
200 P B -0.4504 Soluble
201 S B -0.4131 Soluble
202 S B -0.2700 Soluble
203 S B 0.0136 Aggregation-prone
204 L B 0.1417 Aggregation-prone
205 T B -0.4073 Soluble
206 Y B -0.5039 Soluble
207 I B -1.1762 Soluble
208 C B 0.0000 Buried
209 N B 0.0000 Buried
210 V B 0.0000 Buried
211 N B -2.2541 Soluble
212 H B 0.0000 Buried
213 K B -2.9117 Soluble
214 P B -1.7589 Soluble
215 S B -1.8646 Soluble
216 N B -2.6247 Soluble
217 T B -2.1359 Soluble
218 K B -2.7309 Soluble
219 V B -1.6007 Soluble
220 D B -2.5266 Soluble
221 K B -1.9678 Soluble
222 K B -2.5011 Soluble
223 V B 0.0000 Buried
224 E B -2.5946 Soluble
225 P B -1.7844 Soluble
226 K B -2.2085 Soluble
227 S B -1.1490 Soluble
228 C B -0.2804 Soluble
1 D A -2.1840 Soluble
2 I A -1.8852 Soluble
3 Q A -2.1604 Soluble
4 M A 0.0000 Buried
5 T A -1.3840 Soluble
6 Q A -0.9056 Soluble
7 S A -0.7942 Soluble
8 P A -0.4693 Soluble
9 S A -0.5776 Soluble
10 S A -0.4273 Soluble
11 L A -0.2597 Soluble
12 S A -0.6971 Soluble
13 A A 0.0000 Buried
14 S A -0.2024 Soluble
15 V A 0.7040 Aggregation-prone
16 G A -0.2832 Soluble
17 D A -1.2845 Soluble
18 R A -2.1329 Soluble
19 V A 0.0000 Buried
20 T A -0.6188 Soluble
21 I A 0.0000 Buried
22 T A -0.9823 Soluble
23 C A 0.0000 Buried
24 R A -2.9927 Soluble
25 A A 0.0000 Buried
26 S A -2.0510 Soluble
27 Q A -2.3421 Soluble
28 S A -2.1442 Soluble
29 I A 0.0000 Buried
36 R A -3.1652 Soluble
37 R A -2.7061 Soluble
38 Y A -0.9542 Soluble
39 L A 0.0000 Buried
40 N A 0.0000 Buried
41 W A 0.0000 Buried
42 Y A 0.0000 Buried
43 H A -0.9699 Soluble
44 Q A 0.0000 Buried
45 K A -1.7331 Soluble
46 P A -1.3883 Soluble
47 G A -1.6259 Soluble
48 K A -2.6755 Soluble
49 A A -1.7897 Soluble
50 P A 0.0000 Buried
51 K A -1.9659 Soluble
52 L A 0.0000 Buried
53 L A 0.0000 Buried
54 I A 0.0000 Buried
55 Y A 0.3714 Aggregation-prone
56 G A -0.5933 Soluble
57 A A 0.0000 Buried
65 S A -0.4327 Soluble
66 T A 0.1398 Aggregation-prone
67 L A 0.2728 Aggregation-prone
68 Q A -0.3550 Soluble
69 S A -0.4913 Soluble
70 G A -0.5809 Soluble
71 V A 0.0000 Buried
72 P A -0.4319 Soluble
74 S A -0.4994 Soluble
75 R A -0.8066 Soluble
76 F A 0.0000 Buried
77 S A -0.3898 Soluble
78 G A -0.2825 Soluble
79 S A -1.0092 Soluble
80 G A -1.8644 Soluble
83 S A -2.1168 Soluble
84 G A -2.4329 Soluble
85 T A -2.6086 Soluble
86 D A -3.0056 Soluble
87 F A 0.0000 Buried
88 T A -0.9283 Soluble
89 L A 0.0000 Buried
90 T A -0.6485 Soluble
91 I A 0.0000 Buried
92 S A -1.3232 Soluble
93 S A -0.9308 Soluble
94 L A 0.0000 Buried
95 Q A -0.7679 Soluble
96 P A -0.8441 Soluble
97 E A -1.9564 Soluble
98 D A 0.0000 Buried
99 F A 0.0000 Buried
100 A A 0.0000 Buried
101 V A -0.2566 Soluble
102 Y A 0.0000 Buried
103 Y A 0.0000 Buried
104 C A 0.0000 Buried
105 Q A 0.0000 Buried
106 Q A 0.0000 Buried
107 S A -0.3298 Soluble
108 H A -1.0646 Soluble
109 S A -0.4318 Soluble
114 A A -0.2125 Soluble
115 P A -0.5653 Soluble
116 L A -0.1921 Soluble
117 T A -0.5549 Soluble
118 F A -0.2040 Soluble
119 G A 0.0000 Buried
120 G A -1.0511 Soluble
121 G A -0.7231 Soluble
122 T A 0.0000 Buried
123 K A -0.6385 Soluble
124 V A 0.0000 Buried
125 E A 0.0000 Buried
126 I A -0.2078 Soluble
127 K A -1.1454 Soluble
128 R A -1.0316 Soluble
129 T A 0.0326 Aggregation-prone
130 V A 0.7817 Aggregation-prone
131 A A 0.1842 Aggregation-prone
132 A A 0.0285 Aggregation-prone
133 P A 0.0000 Buried
134 S A -0.1766 Soluble
135 V A 0.0000 Buried
136 F A -0.0320 Soluble
137 I A 0.0000 Buried
138 F A 0.0000 Buried
139 P A -0.4457 Soluble
140 P A -0.8183 Soluble
141 S A -1.5832 Soluble
142 D A -2.9285 Soluble
143 E A -2.9559 Soluble
144 Q A 0.0000 Buried
145 L A -2.2772 Soluble
146 K A -2.8470 Soluble
147 S A -1.7950 Soluble
148 G A -1.4320 Soluble
149 T A -1.0630 Soluble
150 A A 0.0000 Buried
151 S A 0.0000 Buried
152 V A 0.0000 Buried
153 V A 0.0000 Buried
154 C A 0.0000 Buried
155 L A 0.0000 Buried
156 L A 0.0000 Buried
157 N A 0.0000 Buried
158 N A -0.8616 Soluble
159 F A 0.0000 Buried
160 Y A 0.0000 Buried
161 P A -1.6133 Soluble
162 R A -2.9566 Soluble
163 E A -3.2238 Soluble
164 A A -2.3042 Soluble
165 K A -2.4119 Soluble
166 V A -1.0767 Soluble
167 Q A -0.7670 Soluble
168 W A 0.0000 Buried
169 K A -0.9471 Soluble
170 V A 0.0000 Buried
171 D A -1.8510 Soluble
172 N A -1.6576 Soluble
173 A A -0.5545 Soluble
174 L A 0.1735 Aggregation-prone
175 Q A -0.5973 Soluble
176 S A -0.8178 Soluble
177 G A -1.3351 Soluble
178 N A -1.7191 Soluble
179 S A -1.4912 Soluble
180 Q A -1.3569 Soluble
181 E A -1.5827 Soluble
182 S A -0.5797 Soluble
183 V A -0.5667 Soluble
184 T A -0.8821 Soluble
185 E A -2.1597 Soluble
186 Q A -1.7892 Soluble
187 D A -1.8873 Soluble
188 S A -1.7292 Soluble
189 K A -2.3340 Soluble
190 D A -1.8243 Soluble
191 S A -1.6954 Soluble
192 T A 0.0000 Buried
193 Y A 0.0000 Buried
194 S A 0.0000 Buried
195 L A -0.4319 Soluble
196 S A 0.0000 Buried
197 S A 0.0000 Buried
198 T A -0.7210 Soluble
199 L A 0.0000 Buried
200 T A -0.6828 Soluble
201 L A -0.8359 Soluble
202 S A -1.0672 Soluble
203 K A -2.1328 Soluble
204 A A -1.7241 Soluble
205 D A -2.3125 Soluble
206 Y A 0.0000 Buried
207 E A -2.8140 Soluble
208 K A -3.0497 Soluble
209 H A -2.3986 Soluble
210 K A -2.1603 Soluble
211 V A -0.9339 Soluble
212 Y A 0.0000 Buried
213 A A -0.8126 Soluble
214 C A 0.0000 Buried
215 E A -1.0032 Soluble
216 V A 0.0000 Buried
217 T A -1.2124 Soluble
218 H A 0.0000 Buried
219 Q A -1.7675 Soluble
220 G A -0.3661 Soluble
221 L A -0.2128 Soluble
222 S A -0.4619 Soluble
223 S A -0.4383 Soluble
224 P A -0.5659 Soluble
225 V A -0.0827 Soluble
226 T A -0.5551 Soluble
227 K A -0.7607 Soluble
228 S A -0.5267 Soluble
229 F A -0.7860 Soluble
230 N A -1.3235 Soluble
231 R A -1.7632 Soluble
232 G A -1.7179 Soluble
233 E A -1.9225 Soluble
234 C A -0.8207 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
Load structure to view sequence…
Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.8047 2.2512 CSV PDB
4.5 -0.8491 2.2011 CSV PDB
5.0 -0.8994 2.1244 CSV PDB
5.5 -0.9458 2.0334 CSV PDB
6.0 -0.9772 1.9835 CSV PDB
6.5 -0.9849 1.9522 CSV PDB
7.0 -0.9694 1.9342 CSV PDB
7.5 -0.9384 1.9287 CSV PDB
8.0 -0.8984 1.9303 CSV PDB
8.5 -0.851 1.9347 CSV PDB
9.0 -0.7965 2.0594 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH