Omburtamab / 5cma

A4DAB192_5cma_B_A | Source PDB: 5cma | Chains: B, A | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.7735
Max Score
1.1015
Min Score
-3.5513
Total Score
-329.49
Score CDR
-0.4642
Score non-CDR
-0.81

Calculation Parameters

Chain Sequence(s) QVQLQQSGAELVKPGASVKLSCKASGYTFTNYDINWVRQRPEQGLEWIGWIFPGDGSTQYNEKFKGKATLTTDTSSSTAYMQLSRLTSEDSAVYFCARQTTATWFAYWGQGTLVTVSAASTKGPSVFPLAPGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSDIVMTQSPATLSVTPGDRVSLSCRASQSISDYLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGSDFTLSINSVEPEDVGVYYCQNGHSFPLTFGAGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE input.pdb
Selected Chain(s) B (Heavy), A (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.5513
Maximum Score 1.1015
Average Score -0.7735
Total Score -329.4935

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
1 Q B -1.3991 Soluble
2 V B -0.6634 Soluble
3 Q B -1.6934 Soluble
4 L B 0.0000 Buried
5 Q B -2.1493 Soluble
6 Q B 0.0000 Buried
7 S B -1.0867 Soluble
8 G B -1.1711 Soluble
9 A B -0.6826 Soluble
11 E B -0.9148 Soluble
12 L B -0.4246 Soluble
13 V B 0.0000 Buried
14 K B -2.0841 Soluble
15 P B -1.8017 Soluble
16 G B -1.8896 Soluble
17 A B -1.4910 Soluble
18 S B -1.5447 Soluble
19 V B 0.0000 Buried
20 K B -1.7527 Soluble
21 L B 0.0000 Buried
22 S B -0.9041 Soluble
23 C B 0.0000 Buried
24 K B -1.7864 Soluble
25 A B 0.0000 Buried
26 S B -1.1057 Soluble
27 G B -0.9121 Soluble
28 Y B -0.4434 Soluble
29 T B -0.3406 Soluble
30 F B 0.0000 Buried
35 T B -1.1436 Soluble
36 N B -1.4176 Soluble
37 Y B -0.4258 Soluble
38 D B -0.2506 Soluble
39 I B 0.0000 Buried
40 N B 0.0000 Buried
41 W B 0.0000 Buried
42 V B 0.0000 Buried
43 R B 0.0000 Buried
44 Q B -0.8814 Soluble
45 R B -1.5560 Soluble
46 P B -1.8045 Soluble
47 E B -2.6557 Soluble
48 Q B -2.3763 Soluble
49 G B -1.1874 Soluble
50 L B 0.0000 Buried
51 E B -0.4376 Soluble
52 W B 0.0000 Buried
53 I B 0.0000 Buried
54 G B 0.0000 Buried
55 W B 0.0657 Aggregation-prone
56 I B 0.0000 Buried
57 F B -0.4735 Soluble
58 P B 0.0000 Buried
59 G B -1.6522 Soluble
62 D B -2.1415 Soluble
63 G B -1.2877 Soluble
64 S B -0.7617 Soluble
65 T B -0.4155 Soluble
66 Q B -0.7005 Soluble
67 Y B -1.2064 Soluble
68 N B -1.7121 Soluble
69 E B -3.4734 Soluble
70 K B -3.2810 Soluble
71 F B 0.0000 Buried
72 K B -3.2465 Soluble
74 G B -2.3310 Soluble
75 K B -2.1445 Soluble
76 A B 0.0000 Buried
77 T B -0.9288 Soluble
78 L B 0.0000 Buried
79 T B -0.3354 Soluble
80 T B -1.0569 Soluble
81 D B -1.5993 Soluble
82 T B -1.1802 Soluble
83 S B -0.7396 Soluble
84 S B -0.8710 Soluble
85 S B -0.9223 Soluble
86 T B 0.0000 Buried
87 A B 0.0000 Buried
88 Y B -0.6920 Soluble
89 M B 0.0000 Buried
90 Q B -1.3097 Soluble
91 L B 0.0000 Buried
92 S B -1.8110 Soluble
93 R B -2.4800 Soluble
94 L B 0.0000 Buried
95 T B -1.6497 Soluble
96 S B -1.4400 Soluble
97 E B -2.0363 Soluble
98 D B 0.0000 Buried
99 S B -0.7451 Soluble
100 A B 0.0000 Buried
101 V B 0.1906 Aggregation-prone
102 Y B 0.0000 Buried
103 F B 0.0000 Buried
104 C B 0.0000 Buried
105 A B 0.0000 Buried
106 R B 0.0000 Buried
107 Q B -0.1751 Soluble
108 T B -0.1909 Soluble
109 T B -0.2329 Soluble
110 A B -0.1906 Soluble
113 T B -0.0343 Soluble
114 W B 0.0000 Buried
115 F B 0.0000 Buried
116 A B -0.1049 Soluble
117 Y B 0.0673 Aggregation-prone
118 W B -0.6256 Soluble
119 G B 0.0000 Buried
120 Q B -1.9985 Soluble
121 G B -1.0698 Soluble
122 T B 0.0000 Buried
123 L B -0.0237 Soluble
124 V B 0.0000 Buried
125 T B -0.5328 Soluble
126 V B 0.0000 Buried
127 S B -0.6834 Soluble
128 A B -0.6603 Soluble
129 A B -0.4833 Soluble
130 S B -0.6828 Soluble
131 T B -0.9164 Soluble
132 K B -1.6639 Soluble
133 G B -1.7157 Soluble
134 P B -0.8211 Soluble
135 S B -0.5870 Soluble
136 V B 0.0000 Buried
137 F B 0.0000 Buried
138 P B -1.2817 Soluble
139 L B 0.0000 Buried
140 A B -0.9742 Soluble
141 P B -0.7598 Soluble
142 G B -0.6425 Soluble
143 T B -0.4964 Soluble
144 A B 0.0000 Buried
145 A B 0.0000 Buried
146 L B 0.0000 Buried
147 G B 0.0000 Buried
148 C B 0.0000 Buried
149 L B 0.0000 Buried
150 V B 0.0000 Buried
151 K B 0.0000 Buried
152 D B -0.6768 Soluble
153 Y B 0.0000 Buried
154 F B 0.0000 Buried
155 P B 0.0000 Buried
156 E B -0.3810 Soluble
157 P B -0.6367 Soluble
158 V B -0.6216 Soluble
159 T B -0.5663 Soluble
160 V B -0.1592 Soluble
161 S B -0.3834 Soluble
162 W B 0.0000 Buried
163 N B -0.9458 Soluble
164 S B -0.6681 Soluble
165 G B -0.5286 Soluble
166 A B -0.2722 Soluble
167 L B -0.0734 Soluble
168 T B -0.2047 Soluble
169 S B -0.2004 Soluble
170 G B -0.2305 Soluble
171 V B 0.0950 Aggregation-prone
172 H B -0.3061 Soluble
173 T B -0.1178 Soluble
174 F B 0.0000 Buried
175 P B -0.2223 Soluble
176 A B 0.2002 Aggregation-prone
177 V B 0.5368 Aggregation-prone
178 L B 1.1015 Aggregation-prone
179 Q B 0.3050 Aggregation-prone
180 S B -0.2017 Soluble
181 S B -0.2873 Soluble
182 G B -0.1153 Soluble
183 L B -0.0578 Soluble
184 Y B 0.3446 Aggregation-prone
185 S B 0.0000 Buried
186 L B 0.0000 Buried
187 S B 0.0000 Buried
188 S B 0.0000 Buried
189 V B 0.0000 Buried
190 V B 0.0000 Buried
191 T B -0.1507 Soluble
192 V B 0.0000 Buried
193 P B -0.4976 Soluble
194 S B -0.5539 Soluble
195 S B -0.6552 Soluble
196 S B 0.0000 Buried
197 L B -0.9087 Soluble
198 G B -1.0423 Soluble
199 T B -0.8775 Soluble
200 Q B -1.2984 Soluble
201 T B -1.3326 Soluble
202 Y B 0.0000 Buried
203 I B -1.4090 Soluble
204 C B 0.0000 Buried
205 N B -1.3515 Soluble
206 V B 0.0000 Buried
207 N B -1.9330 Soluble
208 H B 0.0000 Buried
209 K B -2.9693 Soluble
210 P B -1.7997 Soluble
211 S B -2.0093 Soluble
212 N B -2.7018 Soluble
213 T B -2.2061 Soluble
214 K B -2.6762 Soluble
215 V B -1.5499 Soluble
216 D B -2.1818 Soluble
217 K B -2.1825 Soluble
218 R B -2.6580 Soluble
219 V B 0.0000 Buried
220 E B -2.8448 Soluble
221 P B -1.9606 Soluble
222 K B -2.3668 Soluble
223 S B -1.2706 Soluble
1 D A -1.3656 Soluble
2 I A -0.6786 Soluble
3 V A -0.1724 Soluble
4 M A 0.0000 Buried
5 T A -0.6651 Soluble
6 Q A 0.0000 Buried
7 S A -0.5218 Soluble
8 P A -0.3310 Soluble
9 A A -0.3321 Soluble
10 T A -0.5234 Soluble
11 L A -0.2042 Soluble
12 S A -0.4976 Soluble
13 V A 0.0000 Buried
14 T A -1.7380 Soluble
15 P A -1.9872 Soluble
16 G A -2.2883 Soluble
17 D A -3.3536 Soluble
18 R A -3.3985 Soluble
19 V A 0.0000 Buried
20 S A -0.8190 Soluble
21 L A 0.0000 Buried
22 S A -0.9631 Soluble
23 C A 0.0000 Buried
24 R A -2.5743 Soluble
25 A A 0.0000 Buried
26 S A -1.5106 Soluble
27 Q A -1.9005 Soluble
28 S A -1.4876 Soluble
29 I A 0.0000 Buried
36 S A -1.1290 Soluble
37 D A -1.4323 Soluble
38 Y A -0.4035 Soluble
39 L A 0.0000 Buried
40 H A 0.0000 Buried
41 W A 0.0000 Buried
42 Y A 0.0000 Buried
43 Q A 0.0000 Buried
44 Q A -1.3403 Soluble
45 K A -1.7751 Soluble
46 S A -1.5622 Soluble
47 H A -2.2431 Soluble
48 E A -2.7107 Soluble
49 S A -1.6773 Soluble
50 P A 0.0000 Buried
51 R A -1.4915 Soluble
52 L A 0.0000 Buried
53 L A 0.0000 Buried
54 I A 0.0000 Buried
55 K A -0.7075 Soluble
56 Y A -0.7475 Soluble
57 A A 0.0000 Buried
65 S A -1.1095 Soluble
66 Q A -1.5862 Soluble
67 S A -0.8924 Soluble
68 I A -0.3926 Soluble
69 S A -0.4243 Soluble
70 G A -0.4124 Soluble
71 I A -0.2071 Soluble
72 P A -0.4089 Soluble
74 S A -0.6486 Soluble
75 R A -1.2511 Soluble
76 F A 0.0000 Buried
77 S A -0.8016 Soluble
78 G A -0.6525 Soluble
79 S A -0.9081 Soluble
80 G A -1.2933 Soluble
83 S A -1.1352 Soluble
84 G A -1.4166 Soluble
85 S A -1.9791 Soluble
86 D A -2.4255 Soluble
87 F A 0.0000 Buried
88 T A -0.8341 Soluble
89 L A 0.0000 Buried
90 S A -0.9965 Soluble
91 I A 0.0000 Buried
92 N A -2.6637 Soluble
93 S A -2.4582 Soluble
94 V A 0.0000 Buried
95 E A -2.0680 Soluble
96 P A -2.1440 Soluble
97 E A -2.1996 Soluble
98 D A 0.0000 Buried
99 V A 0.0000 Buried
100 G A 0.0000 Buried
101 V A -0.5544 Soluble
102 Y A 0.0000 Buried
103 Y A 0.0000 Buried
104 C A 0.0000 Buried
105 Q A 0.0000 Buried
106 N A 0.0000 Buried
107 G A 0.0000 Buried
108 H A -0.5303 Soluble
109 S A -0.0009 Soluble
114 F A 0.6725 Aggregation-prone
115 P A -0.3455 Soluble
116 L A 0.0000 Buried
117 T A 0.0517 Aggregation-prone
118 F A 0.3251 Aggregation-prone
119 G A 0.0000 Buried
120 A A -0.2611 Soluble
121 G A 0.0000 Buried
122 T A 0.0000 Buried
123 K A -1.3847 Soluble
124 L A 0.0000 Buried
125 E A -1.0108 Soluble
126 L A 0.0000 Buried
127 K A -1.3484 Soluble
128 R A -1.0762 Soluble
129 T A -0.1475 Soluble
130 V A 0.3687 Aggregation-prone
131 A A -0.0517 Soluble
132 A A -0.1188 Soluble
133 P A 0.0000 Buried
134 S A -0.1262 Soluble
135 V A 0.0000 Buried
136 F A 0.1226 Aggregation-prone
137 I A 0.1057 Aggregation-prone
138 F A 0.0000 Buried
139 P A -0.4878 Soluble
140 P A -0.8961 Soluble
141 S A 0.0000 Buried
142 D A -3.1311 Soluble
143 E A -3.2422 Soluble
144 Q A 0.0000 Buried
145 L A -2.3985 Soluble
146 K A -2.9338 Soluble
147 S A -1.8166 Soluble
148 G A -1.5811 Soluble
149 T A -1.2413 Soluble
150 A A 0.0000 Buried
151 S A 0.0000 Buried
152 V A 0.0000 Buried
153 V A 0.0000 Buried
154 C A 0.0000 Buried
155 L A 0.0000 Buried
156 L A 0.0000 Buried
157 N A 0.0000 Buried
158 N A -0.8972 Soluble
159 F A 0.0000 Buried
160 Y A 0.0000 Buried
161 P A -1.7615 Soluble
162 R A -3.0326 Soluble
163 E A -3.2013 Soluble
164 A A -2.2179 Soluble
165 K A -2.0774 Soluble
166 V A -0.9228 Soluble
167 Q A -0.3777 Soluble
168 W A 0.0000 Buried
169 K A -0.4661 Soluble
170 V A 0.0000 Buried
171 D A -1.9190 Soluble
172 N A -1.3310 Soluble
173 A A -0.2592 Soluble
174 L A 0.7846 Aggregation-prone
175 Q A -0.2374 Soluble
176 S A -0.6706 Soluble
177 G A -1.2956 Soluble
178 N A -1.6599 Soluble
179 S A -1.4633 Soluble
180 Q A -1.4057 Soluble
181 E A -1.7398 Soluble
182 S A -0.9322 Soluble
183 V A -0.6960 Soluble
184 T A 0.0000 Buried
185 E A -1.8544 Soluble
186 Q A 0.0000 Buried
187 D A -1.9224 Soluble
188 S A -2.1844 Soluble
189 K A -2.7415 Soluble
190 D A -2.3217 Soluble
191 S A 0.0000 Buried
192 T A 0.0000 Buried
193 Y A 0.0000 Buried
194 S A 0.0000 Buried
195 L A 0.0000 Buried
196 S A 0.0000 Buried
197 S A 0.0000 Buried
198 T A -0.6851 Soluble
199 L A 0.0000 Buried
200 T A -0.6031 Soluble
201 L A -0.7497 Soluble
202 S A -1.0198 Soluble
203 K A -2.0288 Soluble
204 A A -1.8003 Soluble
205 D A -2.4574 Soluble
206 Y A 0.0000 Buried
207 E A -3.3537 Soluble
208 K A -3.5513 Soluble
209 H A -2.9637 Soluble
210 K A -3.0714 Soluble
211 V A -1.2663 Soluble
212 Y A 0.0000 Buried
213 A A 0.0000 Buried
214 C A 0.0000 Buried
215 E A -0.8311 Soluble
216 V A 0.0000 Buried
217 T A -1.1078 Soluble
218 H A 0.0000 Buried
219 Q A -1.7253 Soluble
220 G A -0.4526 Soluble
221 L A -0.2647 Soluble
222 S A -0.4791 Soluble
223 S A -0.4427 Soluble
224 P A -0.5409 Soluble
225 V A -0.0759 Soluble
226 T A -0.4866 Soluble
227 K A -0.6879 Soluble
228 S A -0.4743 Soluble
229 F A -0.8229 Soluble
230 N A -1.8183 Soluble
231 R A -2.5039 Soluble
232 G A -2.1531 Soluble
233 E A -2.5034 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
Load structure to view sequence…
Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.7761 2.3695 CSV PDB
4.5 -0.8229 2.3302 CSV PDB
5.0 -0.8793 2.2872 CSV PDB
5.5 -0.9341 2.2524 CSV PDB
6.0 -0.9747 2.233 CSV PDB
6.5 -0.9916 2.2205 CSV PDB
7.0 -0.9844 2.1972 CSV PDB
7.5 -0.9612 2.158 CSV PDB
8.0 -0.929 2.11 CSV PDB
8.5 -0.8906 2.0621 CSV PDB
9.0 -0.846 2.0227 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH