Cetuximab / 6arp

A4DAB063_6arp_D_C | Source PDB: 6arp | Chains: D, C | Done
98.23
Yes
10 Å
Yes
Avg A4D Score
-0.7346
Max Score
2.0554
Min Score
-3.7821
Total Score
-315.87
Score CDR
-0.5131
Score non-CDR
-0.7611

Calculation Parameters

Chain Sequence(s) QVQLKQSGPGLVQPSQSLSITCTVSGFDLTDYGVHWVRQSPGKGLEWLGVIWSGGNTDYNTPFTSRLSINKDNSKSQVFFKMNSLQSNDTAIYYCARALTYYDYEFAYWGQGTLVTVSAASTKGPSVFPLAPSSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSDILLTQSPVILSVSPGERVSFSCRASQSIGTNIHWYQQRTNGSPRLLIKYADESIDGIPSRFSGSGSGTDFTLSINSVESEDIADYYCQQNNNWPTTFGAGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE input.pdb
Selected Chain(s) D (Heavy), C (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.7821
Maximum Score 2.0554
Average Score -0.7346
Total Score -315.8746

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
1 Q D -1.4409 Soluble
2 V D -1.0350 Soluble
3 Q D -1.4642 Soluble
4 L D 0.0000 Buried
5 K D -1.8750 Soluble
6 Q D 0.0000 Buried
7 S D -0.7769 Soluble
8 G D -1.0791 Soluble
9 P D -0.4758 Soluble
11 G D -0.3552 Soluble
12 L D 0.0434 Aggregation-prone
13 V D -0.6552 Soluble
14 Q D -1.2231 Soluble
15 P D -1.4878 Soluble
16 S D -1.5469 Soluble
17 Q D -2.0231 Soluble
18 S D -1.8401 Soluble
19 L D 0.0000 Buried
20 S D -0.8573 Soluble
21 I D 0.0000 Buried
22 T D -0.6023 Soluble
23 C D 0.0000 Buried
24 T D -1.0714 Soluble
25 V D 0.0000 Buried
26 S D -1.4272 Soluble
27 G D -1.3031 Soluble
28 F D -1.4622 Soluble
29 D D -2.6545 Soluble
30 L D 0.0000 Buried
35 T D -1.7098 Soluble
36 D D -1.8994 Soluble
37 Y D -0.2128 Soluble
38 G D 0.0000 Buried
39 V D 0.0000 Buried
40 H D 0.0000 Buried
41 W D 0.0000 Buried
42 V D 0.0000 Buried
43 R D -0.4107 Soluble
44 Q D 0.0000 Buried
45 S D -1.0861 Soluble
46 P D -1.0930 Soluble
47 G D -1.4435 Soluble
48 K D -2.1566 Soluble
49 G D -1.1587 Soluble
50 L D 0.0000 Buried
51 E D -0.8735 Soluble
52 W D 0.0000 Buried
53 L D 0.0000 Buried
54 G D 0.0000 Buried
55 V D 0.0000 Buried
56 I D 0.0000 Buried
57 W D -0.6102 Soluble
58 S D -0.9984 Soluble
59 G D -1.3108 Soluble
63 G D -1.5664 Soluble
64 N D -1.8600 Soluble
65 T D -1.3216 Soluble
66 D D -1.0428 Soluble
67 Y D -0.4541 Soluble
68 N D -0.2943 Soluble
69 T D -0.3587 Soluble
70 P D -0.3977 Soluble
71 F D 0.0000 Buried
72 T D -0.4898 Soluble
74 S D -0.5890 Soluble
75 R D -1.0788 Soluble
76 L D 0.0000 Buried
77 S D -1.2050 Soluble
78 I D 0.0000 Buried
79 N D -1.9246 Soluble
80 K D -1.6394 Soluble
81 D D -2.0338 Soluble
82 N D -2.5355 Soluble
83 S D -1.8925 Soluble
84 K D -2.5782 Soluble
85 S D -1.9800 Soluble
86 Q D -1.5957 Soluble
87 V D 0.0000 Buried
88 F D -0.6351 Soluble
89 F D 0.0000 Buried
90 K D -1.9213 Soluble
91 M D 0.0000 Buried
92 N D -2.0059 Soluble
93 S D -1.5305 Soluble
94 L D 0.0000 Buried
95 Q D -2.0272 Soluble
96 S D -1.4391 Soluble
97 N D -1.7490 Soluble
98 D D 0.0000 Buried
99 T D -0.5456 Soluble
100 A D 0.0000 Buried
101 I D 0.4581 Aggregation-prone
102 Y D 0.0000 Buried
103 Y D 0.0000 Buried
104 C D 0.0000 Buried
105 A D 0.0000 Buried
106 R D 0.0000 Buried
107 A D 0.0000 Buried
108 L D 1.0691 Aggregation-prone
109 T D 1.1188 Aggregation-prone
110 Y D 1.7228 Aggregation-prone
111 Y D 1.9081 Aggregation-prone
112 D D 0.0000 Buried
113 Y D 0.6269 Aggregation-prone
114 E D 0.0000 Buried
115 F D 0.0000 Buried
116 A D 0.0156 Aggregation-prone
117 Y D 0.0519 Aggregation-prone
118 W D -0.5039 Soluble
119 G D 0.0000 Buried
120 Q D -1.7236 Soluble
121 G D -0.8470 Soluble
122 T D 0.0000 Buried
123 L D 0.1115 Aggregation-prone
124 V D 0.0000 Buried
125 T D -0.2577 Soluble
126 V D 0.0000 Buried
127 S D -0.4142 Soluble
128 A D -0.2211 Soluble
129 A D -0.2411 Soluble
130 S D -0.4986 Soluble
131 T D -0.7675 Soluble
132 K D -1.3932 Soluble
133 G D -1.4182 Soluble
134 P D 0.0000 Buried
135 S D -0.4621 Soluble
136 V D 0.0000 Buried
137 F D 0.0000 Buried
138 P D -1.1636 Soluble
139 L D 0.0000 Buried
140 A D -1.1318 Soluble
141 P D 0.0000 Buried
142 S D -0.8557 Soluble
143 S D -0.5284 Soluble
144 G D -0.7653 Soluble
145 G D -0.8825 Soluble
146 T D -0.6257 Soluble
147 A D 0.0000 Buried
148 A D 0.0000 Buried
149 L D 0.0000 Buried
150 G D 0.0000 Buried
151 C D 0.0000 Buried
152 L D 0.0000 Buried
153 V D 0.0000 Buried
154 K D 0.0000 Buried
155 D D -0.5592 Soluble
156 Y D 0.0000 Buried
157 F D -0.3327 Soluble
158 P D 0.0000 Buried
159 E D -0.4321 Soluble
160 P D -0.6178 Soluble
161 V D -0.6021 Soluble
162 T D -0.5752 Soluble
163 V D -0.3514 Soluble
164 S D -0.4044 Soluble
165 W D 0.0000 Buried
166 N D -0.8703 Soluble
167 S D -0.6725 Soluble
168 G D -0.5666 Soluble
169 A D -0.2775 Soluble
170 L D -0.0631 Soluble
171 T D -0.2012 Soluble
172 S D -0.2152 Soluble
173 G D -0.2734 Soluble
174 V D 0.1329 Aggregation-prone
175 H D -0.3227 Soluble
176 T D -0.0161 Soluble
177 F D 0.0000 Buried
178 P D -0.3053 Soluble
179 A D 0.2062 Aggregation-prone
180 V D 0.5321 Aggregation-prone
181 L D 1.1825 Aggregation-prone
182 Q D 0.2651 Aggregation-prone
183 S D -0.0606 Soluble
184 S D -0.2390 Soluble
185 G D 0.0440 Aggregation-prone
186 L D 0.0816 Aggregation-prone
187 Y D 0.3942 Aggregation-prone
188 S D 0.0000 Buried
189 L D 0.0000 Buried
190 S D 0.0000 Buried
191 S D 0.0000 Buried
192 V D 0.0000 Buried
193 V D 0.0000 Buried
194 T D -0.1557 Soluble
195 V D 0.0000 Buried
196 P D -0.5692 Soluble
197 S D -0.6511 Soluble
198 S D -0.6661 Soluble
199 S D -0.7004 Soluble
200 L D -0.8952 Soluble
201 G D -1.0223 Soluble
202 T D -0.8649 Soluble
203 Q D -1.5062 Soluble
204 T D -1.1729 Soluble
205 Y D 0.0000 Buried
206 I D -1.0919 Soluble
207 C D 0.0000 Buried
208 N D -1.3105 Soluble
209 V D 0.0000 Buried
210 N D -1.9484 Soluble
211 H D 0.0000 Buried
212 K D -2.3867 Soluble
213 P D -1.4255 Soluble
214 S D -1.6938 Soluble
215 N D -2.4513 Soluble
216 T D -1.9968 Soluble
217 K D -2.5467 Soluble
218 V D -1.2833 Soluble
219 D D -1.9762 Soluble
220 K D -1.7118 Soluble
221 K D -1.9233 Soluble
222 V D 0.0000 Buried
223 E D -2.5883 Soluble
224 P D -1.8980 Soluble
225 K D -2.5303 Soluble
226 S D -1.2973 Soluble
1 D C -1.4226 Soluble
2 I C 0.0000 Buried
3 L C 0.6014 Aggregation-prone
4 L C 0.0000 Buried
5 T C -0.4146 Soluble
6 Q C -0.1900 Soluble
7 S C 0.1154 Aggregation-prone
8 P C 0.8971 Aggregation-prone
9 V C 2.0554 Aggregation-prone
10 I C 1.6321 Aggregation-prone
11 L C 0.7143 Aggregation-prone
12 S C -0.2982 Soluble
13 V C -1.1289 Soluble
14 S C -1.7352 Soluble
15 P C -1.9686 Soluble
16 G C -2.1749 Soluble
17 E C -2.9597 Soluble
18 R C -3.2570 Soluble
19 V C 0.0000 Buried
20 S C -0.8461 Soluble
21 F C 0.0000 Buried
22 S C -0.8627 Soluble
23 C C 0.0000 Buried
24 R C -2.4809 Soluble
25 A C 0.0000 Buried
26 S C -1.0203 Soluble
27 Q C -1.5864 Soluble
28 S C -1.5177 Soluble
29 I C 0.0000 Buried
36 G C -1.0063 Soluble
37 T C -0.9954 Soluble
38 N C -0.9522 Soluble
39 I C 0.0000 Buried
40 H C 0.0000 Buried
41 W C 0.0000 Buried
42 Y C 0.0000 Buried
43 Q C 0.0000 Buried
44 Q C -0.9933 Soluble
45 R C -1.5800 Soluble
46 T C -1.4416 Soluble
47 N C -1.8806 Soluble
48 G C -1.4077 Soluble
49 S C -0.9711 Soluble
50 P C 0.0000 Buried
51 R C -0.8299 Soluble
52 L C 0.0000 Buried
53 L C 0.0000 Buried
54 I C 0.0000 Buried
55 K C -1.1216 Soluble
56 Y C -1.0121 Soluble
57 A C 0.0000 Buried
65 D C -2.8621 Soluble
66 E C -2.7752 Soluble
67 S C -1.9422 Soluble
68 I C -1.4590 Soluble
69 D C -1.8983 Soluble
70 G C -1.2356 Soluble
71 I C -0.7379 Soluble
72 P C -0.5359 Soluble
74 S C -0.5933 Soluble
75 R C -1.2122 Soluble
76 F C 0.0000 Buried
77 S C -1.3887 Soluble
78 G C -1.4281 Soluble
79 S C -1.3932 Soluble
80 G C -1.3491 Soluble
83 S C -1.0743 Soluble
84 G C -1.2988 Soluble
85 T C -1.8626 Soluble
86 D C -2.4920 Soluble
87 F C 0.0000 Buried
88 T C -1.1008 Soluble
89 L C 0.0000 Buried
90 S C -1.0352 Soluble
91 I C 0.0000 Buried
92 N C -2.7839 Soluble
93 S C -2.4545 Soluble
94 V C 0.0000 Buried
95 E C -2.2705 Soluble
96 S C -2.2489 Soluble
97 E C -2.1426 Soluble
98 D C 0.0000 Buried
99 I C -1.3410 Soluble
100 A C 0.0000 Buried
101 D C 0.0000 Buried
102 Y C 0.0000 Buried
103 Y C 0.0000 Buried
104 C C 0.0000 Buried
105 Q C 0.0000 Buried
106 Q C 0.0000 Buried
107 N C -0.6391 Soluble
108 N C -1.2642 Soluble
109 N C -1.0680 Soluble
114 W C 0.1349 Aggregation-prone
115 P C -0.2896 Soluble
116 T C 0.0000 Buried
117 T C -0.1478 Soluble
118 F C 0.2521 Aggregation-prone
119 G C 0.0000 Buried
120 A C -0.2232 Soluble
121 G C -0.1016 Soluble
122 T C 0.0000 Buried
123 K C -0.1271 Soluble
124 L C 0.0000 Buried
125 E C -1.0259 Soluble
126 L C 0.0000 Buried
127 K C -1.5549 Soluble
128 R C -1.1974 Soluble
129 T C -0.0958 Soluble
130 V C 0.4153 Aggregation-prone
131 A C -0.0091 Soluble
132 A C -0.1105 Soluble
133 P C 0.0000 Buried
134 S C -0.1662 Soluble
135 V C 0.0000 Buried
136 F C 0.1540 Aggregation-prone
137 I C 0.1407 Aggregation-prone
138 F C 0.0000 Buried
139 P C -0.4474 Soluble
140 P C 0.0000 Buried
141 S C 0.0000 Buried
142 D C -2.9751 Soluble
143 E C -2.7262 Soluble
144 Q C 0.0000 Buried
145 L C -2.2173 Soluble
146 K C -2.7137 Soluble
147 S C -1.6812 Soluble
148 G C -1.3186 Soluble
149 T C -0.9741 Soluble
150 A C 0.0000 Buried
151 S C 0.0000 Buried
152 V C 0.0000 Buried
153 V C 0.0000 Buried
154 C C 0.0000 Buried
155 L C 0.0000 Buried
156 L C 0.0000 Buried
157 N C 0.0000 Buried
158 N C -0.9568 Soluble
159 F C 0.0000 Buried
160 Y C -1.0873 Soluble
161 P C -1.6484 Soluble
162 R C -2.9835 Soluble
163 E C -3.2095 Soluble
164 A C -2.3909 Soluble
165 K C -2.6522 Soluble
166 V C 0.0000 Buried
167 Q C -1.0358 Soluble
168 W C 0.0000 Buried
169 K C -0.9122 Soluble
170 V C 0.0000 Buried
171 D C -2.0505 Soluble
172 N C -1.6185 Soluble
173 A C -0.3380 Soluble
174 L C 0.6366 Aggregation-prone
175 Q C -0.1965 Soluble
176 S C -0.4444 Soluble
177 G C -0.9714 Soluble
178 N C -0.9614 Soluble
179 S C -1.1682 Soluble
180 Q C -1.2660 Soluble
181 E C -1.5926 Soluble
182 S C -0.8712 Soluble
183 V C -0.8080 Soluble
184 T C -1.1055 Soluble
185 E C -2.1625 Soluble
186 Q C 0.0000 Buried
187 D C -1.9678 Soluble
188 S C -2.2377 Soluble
189 K C -2.6505 Soluble
190 D C -1.9613 Soluble
191 S C 0.0000 Buried
192 T C 0.0000 Buried
193 Y C 0.0000 Buried
194 S C 0.0000 Buried
195 L C 0.0000 Buried
196 S C 0.0000 Buried
197 S C 0.0000 Buried
198 T C -0.5811 Soluble
199 L C 0.0000 Buried
200 T C -0.3404 Soluble
201 L C -0.6972 Soluble
202 S C -1.0817 Soluble
203 K C -2.1134 Soluble
204 A C -1.9784 Soluble
205 D C -2.7261 Soluble
206 Y C 0.0000 Buried
207 E C -3.7346 Soluble
208 K C -3.7821 Soluble
209 H C -3.1227 Soluble
210 K C -3.3054 Soluble
211 V C -1.3898 Soluble
212 Y C 0.0000 Buried
213 A C -0.9662 Soluble
214 C C 0.0000 Buried
215 E C -1.4883 Soluble
216 V C 0.0000 Buried
217 T C -1.4115 Soluble
218 H C 0.0000 Buried
219 Q C -1.7231 Soluble
220 G C -0.4031 Soluble
221 L C -0.2330 Soluble
222 S C -0.4623 Soluble
223 S C -0.4178 Soluble
224 P C -0.6754 Soluble
225 V C -0.2093 Soluble
226 T C -0.6491 Soluble
227 K C -0.7237 Soluble
228 S C -0.5511 Soluble
229 F C -0.9224 Soluble
230 N C -1.9378 Soluble
231 R C -2.6577 Soluble
232 G C -2.2436 Soluble
233 E C -2.5312 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
Load structure to view sequence…
Downloads
Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
Load structure at specific pH condition
A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.679 2.8969 CSV PDB
4.5 -0.7258 2.8451 CSV PDB
5.0 -0.7827 2.7729 CSV PDB
5.5 -0.8401 2.6902 CSV PDB
6.0 -0.8866 2.6034 CSV PDB
6.5 -0.9117 2.5153 CSV PDB
7.0 -0.9135 2.4268 CSV PDB
7.5 -0.8989 2.3386 CSV PDB
8.0 -0.875 2.3016 CSV PDB
8.5 -0.8438 2.3641 CSV PDB
9.0 -0.8053 2.4268 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH