Certolizumab / 5wux

A4DAB062_5wux_A_B | Source PDB: 5wux | Chains: A, B | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.6622
Max Score
2.1319
Min Score
-3.632
Total Score
-279.44
Score CDR
-0.1141
Score non-CDR
-0.7276

Calculation Parameters

Chain Sequence(s) EVQLVESGGGLVQPGGSLRLSCAASGYVFTDYGMNWVRQAPGKGLEWMGWINTYIGEPIYADSVKGRFTFSLDTSKSTAYLQMNSLRAEDTAVYYCARGYRSYAMDYWGQGTLVTVSSASTKGPSVFPLAPTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPDIQMTQSPSSLSASVGDRVTITCKASQNVGTNVAWYQQKPGKAPKALIYSASFLYSGVPYRFSGSGSGTDFTLTISSLQPEDFATYYCQQYNIYPLTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG input.pdb
Selected Chain(s) A (Heavy), B (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.632
Maximum Score 2.1319
Average Score -0.6622
Total Score -279.4423

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
1 E A -2.0005 Soluble
2 V A -0.6918 Soluble
3 Q A -0.9995 Soluble
4 L A 0.0000 Buried
5 V A 0.3598 Aggregation-prone
6 E A 0.0000 Buried
7 S A -0.3827 Soluble
8 G A -0.7473 Soluble
9 G A -0.5540 Soluble
11 G A 0.0000 Buried
12 L A -0.2819 Soluble
13 V A 0.0000 Buried
14 Q A -1.7383 Soluble
15 P A -2.0282 Soluble
16 G A -1.7356 Soluble
17 G A -1.4713 Soluble
18 S A -1.4929 Soluble
19 L A -1.4222 Soluble
20 R A -2.2516 Soluble
21 L A 0.0000 Buried
22 S A -0.4384 Soluble
23 C A 0.0000 Buried
24 A A -0.1620 Soluble
25 A A 0.0000 Buried
26 S A -0.5375 Soluble
27 G A -0.7304 Soluble
28 Y A 0.1720 Aggregation-prone
29 V A 1.2329 Aggregation-prone
30 F A 0.0000 Buried
35 T A 0.3792 Aggregation-prone
36 D A -0.6921 Soluble
37 Y A -0.0449 Soluble
38 G A 0.0000 Buried
39 M A 0.0000 Buried
40 N A 0.0000 Buried
41 W A 0.0000 Buried
42 V A 0.0000 Buried
43 R A -0.5285 Soluble
44 Q A 0.0000 Buried
45 A A -1.2283 Soluble
46 P A -0.9768 Soluble
47 G A -1.4762 Soluble
48 K A -2.3378 Soluble
49 G A -1.6535 Soluble
50 L A 0.0000 Buried
51 E A -1.5201 Soluble
52 W A 0.0000 Buried
53 M A 0.0000 Buried
54 G A 0.0000 Buried
55 W A 0.0000 Buried
56 I A 0.0000 Buried
57 N A -0.2309 Soluble
58 T A 0.0000 Buried
59 Y A 1.5442 Aggregation-prone
62 I A 1.9042 Aggregation-prone
63 G A 0.1247 Aggregation-prone
64 E A -1.1391 Soluble
65 P A -0.5260 Soluble
66 I A -0.4027 Soluble
67 Y A -0.6571 Soluble
68 A A -1.3297 Soluble
69 D A -2.4362 Soluble
70 S A -1.7040 Soluble
71 V A 0.0000 Buried
72 K A -2.6022 Soluble
74 G A -1.9490 Soluble
75 R A -1.6210 Soluble
76 F A 0.0000 Buried
77 T A -1.0183 Soluble
78 F A 0.0000 Buried
79 S A -0.3845 Soluble
80 L A -0.2550 Soluble
81 D A -0.8092 Soluble
82 T A -0.4463 Soluble
83 S A -1.1394 Soluble
84 K A -1.9066 Soluble
85 S A -0.7570 Soluble
86 T A 0.0000 Buried
87 A A 0.0000 Buried
88 Y A -0.4223 Soluble
89 L A 0.0000 Buried
90 Q A -1.7313 Soluble
91 M A 0.0000 Buried
92 N A -2.2059 Soluble
93 S A -1.6358 Soluble
94 L A 0.0000 Buried
95 R A -2.9718 Soluble
96 A A -2.0220 Soluble
97 E A -2.4268 Soluble
98 D A 0.0000 Buried
99 T A -0.8350 Soluble
100 A A 0.0000 Buried
101 V A 0.0754 Aggregation-prone
102 Y A 0.0000 Buried
103 Y A 0.0000 Buried
104 C A 0.0000 Buried
105 A A 0.0000 Buried
106 R A 0.0000 Buried
107 G A 0.0000 Buried
108 Y A 0.1053 Aggregation-prone
109 R A -0.9387 Soluble
110 S A -0.1745 Soluble
113 Y A 0.2128 Aggregation-prone
114 A A 0.0000 Buried
115 M A 0.0000 Buried
116 D A 0.0728 Aggregation-prone
117 Y A 0.1770 Aggregation-prone
118 W A 0.0000 Buried
119 G A 0.0000 Buried
120 Q A -1.3598 Soluble
121 G A -0.6976 Soluble
122 T A -0.0974 Soluble
123 L A 0.1801 Aggregation-prone
124 V A 0.0000 Buried
125 T A 0.0000 Buried
126 V A 0.0000 Buried
127 S A -1.0775 Soluble
128 S A -0.8896 Soluble
129 A A -0.5263 Soluble
130 S A -0.6430 Soluble
131 T A -0.8799 Soluble
132 K A -1.5481 Soluble
133 G A -1.6576 Soluble
134 P A -0.7791 Soluble
135 S A -0.2264 Soluble
136 V A -0.3959 Soluble
137 F A 0.0000 Buried
138 P A -1.1726 Soluble
139 L A 0.0000 Buried
140 A A -0.9093 Soluble
141 P A -0.4978 Soluble
142 T A -0.2820 Soluble
143 A A -0.1320 Soluble
144 A A 0.0000 Buried
145 L A 0.0000 Buried
146 G A 0.0000 Buried
147 C A 0.0000 Buried
148 L A 0.0000 Buried
149 V A 0.0000 Buried
150 K A 0.0000 Buried
151 D A -0.4978 Soluble
152 Y A 0.0000 Buried
153 F A -0.2825 Soluble
154 P A 0.0000 Buried
155 E A -0.6359 Soluble
156 P A -0.5699 Soluble
157 V A -0.4289 Soluble
158 T A -0.5425 Soluble
159 V A -0.2320 Soluble
160 S A -0.4922 Soluble
161 W A 0.0000 Buried
162 N A -0.7292 Soluble
163 S A -0.7510 Soluble
164 G A -0.5689 Soluble
165 A A -0.2518 Soluble
166 L A -0.0535 Soluble
167 T A -0.1834 Soluble
168 S A -0.1949 Soluble
169 G A -0.2203 Soluble
170 V A 0.1668 Aggregation-prone
171 H A -0.3383 Soluble
172 T A -0.0148 Soluble
173 F A 0.0000 Buried
174 P A -0.3621 Soluble
175 A A 0.1859 Aggregation-prone
176 V A 0.4610 Aggregation-prone
177 L A 1.0626 Aggregation-prone
178 Q A 0.2014 Aggregation-prone
179 S A -0.2182 Soluble
180 S A -0.2863 Soluble
181 G A -0.0855 Soluble
182 L A 0.0642 Aggregation-prone
183 Y A 0.4946 Aggregation-prone
184 S A 0.0000 Buried
185 L A 0.0000 Buried
186 S A 0.0000 Buried
187 S A 0.0000 Buried
188 V A 0.0000 Buried
189 V A 0.0000 Buried
190 T A -0.1649 Soluble
191 V A 0.0000 Buried
192 P A -0.3769 Soluble
193 S A -0.4280 Soluble
194 S A -0.5156 Soluble
195 S A 0.0000 Buried
196 L A -0.6698 Soluble
197 G A -1.0598 Soluble
198 T A -0.8085 Soluble
199 Q A -1.2993 Soluble
200 T A -1.0844 Soluble
201 Y A -0.8401 Soluble
202 I A -1.2104 Soluble
203 C A 0.0000 Buried
204 N A -1.6191 Soluble
205 V A 0.0000 Buried
206 N A -1.7766 Soluble
207 H A 0.0000 Buried
208 K A -2.4727 Soluble
209 P A -1.3488 Soluble
210 S A -1.8053 Soluble
211 N A -2.3447 Soluble
212 T A -2.0331 Soluble
213 K A -2.5489 Soluble
214 V A -1.3493 Soluble
215 D A -2.5529 Soluble
216 K A -1.9331 Soluble
217 K A -2.5361 Soluble
218 V A -1.8111 Soluble
219 E A -2.2553 Soluble
220 P A -1.1547 Soluble
1 D B -1.9995 Soluble
2 I B 0.0000 Buried
3 Q B -2.2437 Soluble
4 M B 0.0000 Buried
5 T B -1.3046 Soluble
6 Q B 0.0000 Buried
7 S B -0.6261 Soluble
8 P B -0.5652 Soluble
9 S B -0.9037 Soluble
10 S B -1.1260 Soluble
11 L B -0.8282 Soluble
12 S B -1.1259 Soluble
13 A B -1.2067 Soluble
14 S B -1.1733 Soluble
15 V B -0.4736 Soluble
16 G B -0.8360 Soluble
17 D B -2.0519 Soluble
18 R B -2.4411 Soluble
19 V B 0.0000 Buried
20 T B -0.6432 Soluble
21 I B 0.0000 Buried
22 T B -0.8922 Soluble
23 C B 0.0000 Buried
24 K B -2.8832 Soluble
25 A B 0.0000 Buried
26 S B -2.2507 Soluble
27 Q B -2.8357 Soluble
28 N B -2.5988 Soluble
29 V B 0.0000 Buried
36 G B -1.3641 Soluble
37 T B -0.5976 Soluble
38 N B -0.5899 Soluble
39 V B 0.0000 Buried
40 A B 0.0000 Buried
41 W B 0.0000 Buried
42 Y B 0.0000 Buried
43 Q B 0.0000 Buried
44 Q B -1.3589 Soluble
45 K B -1.8132 Soluble
46 P B -1.4890 Soluble
47 G B -1.8379 Soluble
48 K B -2.5293 Soluble
49 A B -1.5779 Soluble
50 P B 0.0000 Buried
51 K B -1.3366 Soluble
52 A B 0.0000 Buried
53 L B 0.0000 Buried
54 I B 0.0000 Buried
55 Y B 0.9270 Aggregation-prone
56 S B 0.3400 Aggregation-prone
57 A B 0.0000 Buried
65 S B 0.7075 Aggregation-prone
66 F B 2.1319 Aggregation-prone
67 L B 1.6542 Aggregation-prone
68 Y B 0.7149 Aggregation-prone
69 S B 0.1895 Aggregation-prone
70 G B -0.2028 Soluble
71 V B 0.1671 Aggregation-prone
72 P B 0.5044 Aggregation-prone
74 Y B 1.1685 Aggregation-prone
75 R B 0.0166 Aggregation-prone
76 F B 0.0000 Buried
77 S B 0.3321 Aggregation-prone
78 G B 0.0000 Buried
79 S B -0.4045 Soluble
80 G B -1.1770 Soluble
83 S B -1.4240 Soluble
84 G B -1.7743 Soluble
85 T B -2.4060 Soluble
86 D B -2.9653 Soluble
87 F B 0.0000 Buried
88 T B -0.8531 Soluble
89 L B 0.0000 Buried
90 T B -0.5783 Soluble
91 I B 0.0000 Buried
92 S B -1.0860 Soluble
93 S B -1.0210 Soluble
94 L B 0.0000 Buried
95 Q B -1.1281 Soluble
96 P B -1.5546 Soluble
97 E B -1.5924 Soluble
98 D B 0.0000 Buried
99 F B 0.0000 Buried
100 A B 0.0000 Buried
101 T B 0.0000 Buried
102 Y B 0.0000 Buried
103 Y B 0.0000 Buried
104 C B 0.0000 Buried
105 Q B 0.0000 Buried
106 Q B 0.0000 Buried
107 Y B 0.0000 Buried
108 N B -0.1563 Soluble
109 I B 0.9657 Aggregation-prone
114 Y B 0.5055 Aggregation-prone
115 P B -0.2160 Soluble
116 L B 0.0000 Buried
117 T B -0.7411 Soluble
118 F B 0.0000 Buried
119 G B 0.0000 Buried
120 Q B -1.5949 Soluble
121 G B 0.0000 Buried
122 T B 0.0000 Buried
123 K B -2.1058 Soluble
124 V B 0.0000 Buried
125 E B -1.8159 Soluble
126 I B 0.0000 Buried
127 K B -1.5930 Soluble
128 R B -0.8227 Soluble
129 T B 0.2569 Aggregation-prone
130 V B 1.2734 Aggregation-prone
131 A B 0.3481 Aggregation-prone
132 A B 0.1183 Aggregation-prone
133 P B 0.0000 Buried
134 S B -0.1683 Soluble
135 V B 0.0168 Aggregation-prone
136 F B 0.2687 Aggregation-prone
137 I B 0.0835 Aggregation-prone
138 F B 0.0000 Buried
139 P B -0.6644 Soluble
140 P B -0.7839 Soluble
141 S B 0.0000 Buried
142 D B -3.0577 Soluble
143 E B -2.9873 Soluble
144 Q B 0.0000 Buried
145 L B -2.2122 Soluble
146 K B -2.9802 Soluble
147 S B -1.8818 Soluble
148 G B -1.6376 Soluble
149 T B -1.0359 Soluble
150 A B 0.0000 Buried
151 S B 0.0000 Buried
152 V B 0.0000 Buried
153 V B 0.0000 Buried
154 C B 0.0000 Buried
155 L B 0.0000 Buried
156 L B 0.0000 Buried
157 N B 0.0000 Buried
158 N B -0.9860 Soluble
159 F B 0.0000 Buried
160 Y B -0.9284 Soluble
161 P B -1.5272 Soluble
162 R B -3.0866 Soluble
163 E B -3.2451 Soluble
164 A B -2.4137 Soluble
165 K B -2.4163 Soluble
166 V B -1.5167 Soluble
167 Q B -0.8224 Soluble
168 W B 0.0000 Buried
169 K B -0.4747 Soluble
170 V B 0.0000 Buried
171 D B -1.5333 Soluble
172 N B -1.4479 Soluble
173 A B -0.5954 Soluble
174 L B 0.3562 Aggregation-prone
175 Q B -0.4601 Soluble
176 S B -0.8817 Soluble
177 G B -1.3006 Soluble
178 N B -1.6443 Soluble
179 S B -1.6385 Soluble
180 Q B -1.8336 Soluble
181 E B -1.9729 Soluble
182 S B -0.9626 Soluble
183 V B -0.8632 Soluble
184 T B -1.2241 Soluble
185 E B -2.3204 Soluble
186 Q B 0.0000 Buried
187 D B -2.2381 Soluble
188 S B -2.1845 Soluble
189 K B -2.6450 Soluble
190 D B -2.2343 Soluble
191 S B 0.0000 Buried
192 T B 0.0000 Buried
193 Y B 0.0000 Buried
194 S B 0.0000 Buried
195 L B 0.0000 Buried
196 S B 0.0000 Buried
197 S B 0.0000 Buried
198 T B -0.8541 Soluble
199 L B 0.0000 Buried
200 T B -0.6294 Soluble
201 L B -0.6627 Soluble
202 S B -0.9407 Soluble
203 K B -2.1720 Soluble
204 A B -1.4431 Soluble
205 D B -2.2286 Soluble
206 Y B -2.1694 Soluble
207 E B -3.6320 Soluble
208 K B -3.5329 Soluble
209 H B -3.1528 Soluble
210 K B -2.9613 Soluble
211 V B -1.5971 Soluble
212 Y B 0.0000 Buried
213 A B 0.0000 Buried
214 C B 0.0000 Buried
215 E B -0.9542 Soluble
216 V B 0.0000 Buried
217 T B -1.2570 Soluble
218 H B 0.0000 Buried
219 Q B -1.2336 Soluble
220 G B -0.1548 Soluble
221 L B -0.0916 Soluble
222 S B -0.4054 Soluble
223 S B -0.4533 Soluble
224 P B -0.5923 Soluble
225 V B -0.3148 Soluble
226 T B -0.8000 Soluble
227 K B -1.1999 Soluble
228 S B -0.7121 Soluble
229 F B -0.7395 Soluble
230 N B -1.8540 Soluble
231 R B -1.6046 Soluble
232 G B -1.2853 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
Load structure to view sequence…
Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.6523 3.7181 CSV PDB
4.5 -0.6945 3.7181 CSV PDB
5.0 -0.745 3.7181 CSV PDB
5.5 -0.7928 3.7181 CSV PDB
6.0 -0.8258 3.7181 CSV PDB
6.5 -0.8346 3.7181 CSV PDB
7.0 -0.8192 3.7181 CSV PDB
7.5 -0.7876 3.718 CSV PDB
8.0 -0.7472 3.718 CSV PDB
8.5 -0.7007 3.7179 CSV PDB
9.0 -0.6481 3.7175 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH