Amatuximab / 4f3f

A4DAB011_4f3f_B_A | Source PDB: 4f3f | Chains: B, A | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.7031
Max Score
1.3552
Min Score
-3.5788
Total Score
-302.35
Score CDR
-0.329
Score non-CDR
-0.7469

Calculation Parameters

Chain Sequence(s) VQLQQSGPELEKPGASVKISCKASGYSFTGYTMNWVKQSHGKSLEWIGLITPYNGASSYNQKFRGKATLTVDKSSSTAYMDLLSLTSEDSAVYFCARGGYDGRGFDYWGSGTPVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKDIELTQSPAIMSASPGEKVTMTCSASSSVSYMHWYQQKSGTSPKRWIYDTSKLASGVPGRFSGSGSGNSYSLTISSVEAEDDATYYCQQWSKHPLTFGSGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG input.pdb
Selected Chain(s) B (Heavy), A (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.5788
Maximum Score 1.3552
Average Score -0.7031
Total Score -302.3531

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
2 V B 0.4225 Aggregation-prone
3 Q B -1.0524 Soluble
4 L B 0.0000 Buried
5 Q B -1.9094 Soluble
6 Q B -1.2318 Soluble
7 S B -0.9392 Soluble
8 G B -0.8514 Soluble
9 P B -0.7219 Soluble
11 E B -1.0323 Soluble
12 L B -0.6825 Soluble
13 E B -1.5124 Soluble
14 K B -2.2551 Soluble
15 P B -1.6634 Soluble
16 G B -1.1407 Soluble
17 A B -0.8808 Soluble
18 S B -0.8796 Soluble
19 V B 0.0000 Buried
20 K B -1.7790 Soluble
21 I B 0.0000 Buried
22 S B -0.8491 Soluble
23 C B 0.0000 Buried
24 K B -1.9079 Soluble
25 A B 0.0000 Buried
26 S B -0.8110 Soluble
27 G B -0.2643 Soluble
28 Y B -0.0479 Soluble
29 S B -0.2023 Soluble
30 F B 0.0000 Buried
35 T B -0.1511 Soluble
36 G B 0.0542 Aggregation-prone
37 Y B 0.2738 Aggregation-prone
38 T B 0.2194 Aggregation-prone
39 M B 0.0000 Buried
40 N B 0.0000 Buried
41 W B 0.0000 Buried
42 V B 0.0000 Buried
43 K B -0.6879 Soluble
44 Q B 0.0000 Buried
45 S B -1.6458 Soluble
46 H B -1.7654 Soluble
47 G B -1.8375 Soluble
48 K B -2.4272 Soluble
49 S B -1.4282 Soluble
50 L B 0.0000 Buried
51 E B -1.1784 Soluble
52 W B 0.0000 Buried
53 I B 0.0000 Buried
54 G B 0.0000 Buried
55 L B 0.2085 Aggregation-prone
56 I B 0.0000 Buried
57 T B 0.0390 Aggregation-prone
58 P B 0.0000 Buried
59 Y B 0.2848 Aggregation-prone
62 N B -0.8651 Soluble
63 G B -0.6562 Soluble
64 A B -0.2808 Soluble
65 S B -0.2474 Soluble
66 S B -0.4271 Soluble
67 Y B -1.1117 Soluble
68 N B 0.0000 Buried
69 Q B -2.8191 Soluble
70 K B -3.0077 Soluble
71 F B 0.0000 Buried
72 R B -3.0741 Soluble
74 G B -1.8764 Soluble
75 K B -1.4445 Soluble
76 A B 0.0000 Buried
77 T B -0.7089 Soluble
78 L B 0.0000 Buried
79 T B -0.1861 Soluble
80 V B -0.5716 Soluble
81 D B -1.3140 Soluble
82 K B -1.6806 Soluble
83 S B -1.0627 Soluble
84 S B -0.9997 Soluble
85 S B -1.1200 Soluble
86 T B 0.0000 Buried
87 A B 0.0000 Buried
88 Y B -0.4368 Soluble
89 M B 0.0000 Buried
90 D B -0.9456 Soluble
91 L B 0.0000 Buried
92 L B -0.1737 Soluble
93 S B -0.6040 Soluble
94 L B 0.0000 Buried
95 T B -1.2870 Soluble
96 S B -1.5473 Soluble
97 E B -1.9853 Soluble
98 D B 0.0000 Buried
99 S B -0.9786 Soluble
100 A B 0.0000 Buried
101 V B -0.0975 Soluble
102 Y B 0.0000 Buried
103 F B 0.0000 Buried
104 C B 0.0000 Buried
105 A B 0.0000 Buried
106 R B 0.0000 Buried
107 G B 0.0000 Buried
108 G B 0.0000 Buried
109 Y B 0.2084 Aggregation-prone
110 D B -1.3451 Soluble
112 G B -0.7708 Soluble
113 R B -0.9115 Soluble
114 G B 0.0000 Buried
115 F B 0.0000 Buried
116 D B 0.0027 Aggregation-prone
117 Y B 0.3907 Aggregation-prone
118 W B -0.1010 Soluble
119 G B 0.0000 Buried
120 S B -0.6428 Soluble
121 G B -0.4229 Soluble
122 T B 0.0000 Buried
123 P B -0.3279 Soluble
124 V B 0.0000 Buried
125 T B 0.0000 Buried
126 V B 0.0000 Buried
127 S B -0.9810 Soluble
128 S B -0.9447 Soluble
129 A B -0.6240 Soluble
130 S B -0.7622 Soluble
131 T B -0.7802 Soluble
132 K B -1.3216 Soluble
133 G B -1.3886 Soluble
134 P B 0.0000 Buried
135 S B -0.4875 Soluble
136 V B 0.0000 Buried
137 F B 0.0000 Buried
138 P B -1.1667 Soluble
139 L B 0.0000 Buried
140 A B -1.2400 Soluble
141 P B 0.0000 Buried
142 S B -1.2797 Soluble
143 S B -1.1122 Soluble
144 K B -1.6364 Soluble
145 S B 0.0000 Buried
146 T B -0.8296 Soluble
147 S B -0.7567 Soluble
148 G B -0.7014 Soluble
149 G B -0.6489 Soluble
150 T B -0.4982 Soluble
151 A B 0.0000 Buried
152 A B 0.0000 Buried
153 L B 0.0000 Buried
154 G B 0.0000 Buried
155 C B 0.0000 Buried
156 L B 0.0000 Buried
157 V B 0.0000 Buried
158 K B 0.0000 Buried
159 D B -0.3717 Soluble
160 Y B 0.0000 Buried
161 F B 0.0000 Buried
162 P B 0.0000 Buried
163 E B -0.2898 Soluble
164 P B -0.6106 Soluble
165 V B -0.5720 Soluble
166 T B -0.5937 Soluble
167 V B -0.3994 Soluble
168 S B -0.4181 Soluble
169 W B 0.0000 Buried
170 N B -0.8018 Soluble
171 S B -0.6929 Soluble
172 G B -0.5716 Soluble
173 A B -0.2608 Soluble
174 L B -0.0441 Soluble
175 T B -0.2109 Soluble
176 S B -0.2423 Soluble
177 G B -0.3256 Soluble
178 V B 0.1028 Aggregation-prone
179 H B -0.3667 Soluble
180 T B -0.1531 Soluble
181 F B 0.0000 Buried
182 P B -0.2611 Soluble
183 A B 0.3666 Aggregation-prone
184 V B 0.5251 Aggregation-prone
185 L B 1.3552 Aggregation-prone
186 Q B 0.2647 Aggregation-prone
187 S B -0.1183 Soluble
188 S B -0.2174 Soluble
189 G B 0.0079 Aggregation-prone
190 L B 0.2032 Aggregation-prone
191 Y B 0.5480 Aggregation-prone
192 S B 0.0000 Buried
193 L B 0.0000 Buried
194 S B 0.0000 Buried
195 S B 0.0000 Buried
196 V B 0.0000 Buried
197 V B 0.0000 Buried
198 T B -0.1634 Soluble
199 V B 0.0000 Buried
200 P B -0.4401 Soluble
201 S B -0.4977 Soluble
202 S B -0.5572 Soluble
203 S B -0.6583 Soluble
204 L B -0.8519 Soluble
205 G B -0.9997 Soluble
206 T B -0.8587 Soluble
207 Q B -1.5273 Soluble
208 T B -1.3381 Soluble
209 Y B 0.0000 Buried
210 I B -1.2839 Soluble
211 C B 0.0000 Buried
212 N B -1.5181 Soluble
213 V B 0.0000 Buried
214 N B -2.0179 Soluble
215 H B 0.0000 Buried
216 K B -2.7572 Soluble
217 P B -1.6567 Soluble
218 S B -1.8310 Soluble
219 N B -2.5442 Soluble
220 T B -2.0834 Soluble
221 K B -2.6567 Soluble
222 V B -1.7345 Soluble
223 D B -2.5720 Soluble
224 K B -2.0948 Soluble
225 K B -2.6208 Soluble
226 V B 0.0000 Buried
227 E B -2.8208 Soluble
228 P B -1.8416 Soluble
229 K B -2.1926 Soluble
1 D A -2.8136 Soluble
2 I A 0.0000 Buried
3 E A -2.4686 Soluble
4 L A 0.0000 Buried
5 T A -0.6802 Soluble
6 Q A 0.0000 Buried
7 S A -0.0253 Soluble
8 P A 0.2277 Aggregation-prone
9 A A 0.5178 Aggregation-prone
10 I A 1.3431 Aggregation-prone
11 M A 0.0000 Buried
12 S A -0.5243 Soluble
13 A A 0.0000 Buried
14 S A -1.8731 Soluble
15 P A -2.1086 Soluble
16 G A -1.9511 Soluble
17 E A -2.7554 Soluble
18 K A -2.5899 Soluble
19 V A -1.1387 Soluble
20 T A -0.3892 Soluble
21 M A 0.0000 Buried
22 T A -0.2366 Soluble
23 C A 0.0000 Buried
24 S A -1.0535 Soluble
25 A A 0.0000 Buried
26 S A -1.6075 Soluble
27 S A -1.5892 Soluble
28 S A -1.0866 Soluble
29 V A 0.0000 Buried
37 S A -0.1838 Soluble
38 Y A 0.7722 Aggregation-prone
39 M A 0.0000 Buried
40 H A 0.0000 Buried
41 W A 0.0000 Buried
42 Y A 0.0000 Buried
43 Q A 0.0000 Buried
44 Q A -0.8186 Soluble
45 K A -1.2657 Soluble
46 S A -1.1099 Soluble
47 G A -0.9451 Soluble
48 T A -0.6471 Soluble
49 S A -0.4841 Soluble
50 P A 0.0000 Buried
51 K A -0.9698 Soluble
52 R A -0.6176 Soluble
53 W A -0.4322 Soluble
54 I A 0.0000 Buried
55 Y A 0.0000 Buried
56 D A -0.3976 Soluble
57 T A -0.3306 Soluble
65 S A -0.7420 Soluble
66 K A -1.1977 Soluble
67 L A -0.2082 Soluble
68 A A 0.0000 Buried
69 S A -0.4433 Soluble
70 G A -0.5203 Soluble
71 V A 0.0000 Buried
72 P A -0.4113 Soluble
74 G A -0.6146 Soluble
75 R A -0.8830 Soluble
76 F A 0.0000 Buried
77 S A -0.5766 Soluble
78 G A -0.5767 Soluble
79 S A -0.6044 Soluble
80 G A -0.6630 Soluble
83 S A -0.7849 Soluble
84 G A -1.0802 Soluble
85 N A -1.7966 Soluble
86 S A -1.1345 Soluble
87 Y A 0.0000 Buried
88 S A -0.3454 Soluble
89 L A 0.0000 Buried
90 T A -0.5161 Soluble
91 I A 0.0000 Buried
92 S A -1.5551 Soluble
93 S A -1.8513 Soluble
94 V A 0.0000 Buried
95 E A -2.3026 Soluble
96 A A -2.3221 Soluble
97 E A -2.4014 Soluble
98 D A 0.0000 Buried
99 D A 0.0000 Buried
100 A A -1.0746 Soluble
101 T A 0.0000 Buried
102 Y A 0.0000 Buried
103 Y A 0.0000 Buried
104 C A 0.0000 Buried
105 Q A 0.0000 Buried
106 Q A 0.0000 Buried
107 W A -0.2381 Soluble
108 S A -0.8310 Soluble
109 K A -2.5267 Soluble
114 H A -2.1088 Soluble
115 P A 0.0000 Buried
116 L A 0.0000 Buried
117 T A -1.2747 Soluble
118 F A 0.0000 Buried
119 G A 0.0000 Buried
120 S A -1.0088 Soluble
121 G A 0.0000 Buried
122 T A 0.0000 Buried
123 K A -0.7479 Soluble
124 V A 0.0000 Buried
125 E A -1.1846 Soluble
126 I A 0.0000 Buried
127 K A -1.9245 Soluble
128 R A -1.1703 Soluble
129 T A -0.0439 Soluble
130 V A 0.4647 Aggregation-prone
131 A A 0.2204 Aggregation-prone
132 A A -0.0345 Soluble
133 P A 0.0000 Buried
134 S A -0.1927 Soluble
135 V A 0.0000 Buried
136 F A 0.0000 Buried
137 I A 0.0000 Buried
138 F A 0.0000 Buried
139 P A -0.8495 Soluble
140 P A 0.0000 Buried
141 S A -1.8885 Soluble
142 D A -3.0656 Soluble
143 E A -3.2051 Soluble
144 Q A 0.0000 Buried
145 L A -2.3778 Soluble
146 K A -2.8795 Soluble
147 S A -1.8873 Soluble
148 G A -1.3404 Soluble
149 T A -0.9260 Soluble
150 A A 0.0000 Buried
151 S A 0.0000 Buried
152 V A 0.0000 Buried
153 V A 0.0000 Buried
154 C A 0.0000 Buried
155 L A 0.0000 Buried
156 L A 0.0000 Buried
157 N A 0.0000 Buried
158 N A -0.9226 Soluble
159 F A 0.0000 Buried
160 Y A 0.0000 Buried
161 P A -1.6988 Soluble
162 R A -2.8552 Soluble
163 E A -3.2347 Soluble
164 A A -2.3311 Soluble
165 K A -2.4468 Soluble
166 V A -1.4488 Soluble
167 Q A -1.2365 Soluble
168 W A 0.0000 Buried
169 K A -0.6829 Soluble
170 V A 0.0000 Buried
171 D A -1.8825 Soluble
172 N A -1.2875 Soluble
173 A A -0.2009 Soluble
174 L A 0.6465 Aggregation-prone
175 Q A -0.3612 Soluble
176 S A -0.7167 Soluble
177 G A -1.1541 Soluble
178 N A -1.3202 Soluble
179 S A -1.5947 Soluble
180 Q A -1.9367 Soluble
181 E A -1.8890 Soluble
182 S A -0.9968 Soluble
183 V A -0.7831 Soluble
184 T A -1.1936 Soluble
185 E A -2.3189 Soluble
186 Q A 0.0000 Buried
187 D A -2.0863 Soluble
188 S A -2.3171 Soluble
189 K A -2.7137 Soluble
190 D A -2.0040 Soluble
191 S A 0.0000 Buried
192 T A 0.0000 Buried
193 Y A 0.0000 Buried
194 S A 0.0000 Buried
195 L A 0.0000 Buried
196 S A 0.0000 Buried
197 S A 0.0000 Buried
198 T A -0.8784 Soluble
199 L A 0.0000 Buried
200 T A -0.6519 Soluble
201 L A -0.7777 Soluble
202 S A -1.3272 Soluble
203 K A -2.2198 Soluble
204 A A -2.0247 Soluble
205 D A -2.7365 Soluble
206 Y A 0.0000 Buried
207 E A -3.4775 Soluble
208 K A -3.5788 Soluble
209 H A -3.2232 Soluble
210 K A -3.2602 Soluble
211 V A -1.9586 Soluble
212 Y A 0.0000 Buried
213 A A 0.0000 Buried
214 C A 0.0000 Buried
215 E A -1.3751 Soluble
216 V A 0.0000 Buried
217 T A -1.3031 Soluble
218 H A 0.0000 Buried
219 Q A -1.7255 Soluble
220 G A -0.4021 Soluble
221 L A -0.2178 Soluble
222 S A -0.4643 Soluble
223 S A -0.4171 Soluble
224 P A -0.5616 Soluble
225 V A -0.1767 Soluble
226 T A -0.7492 Soluble
227 K A -1.2092 Soluble
228 S A -0.9983 Soluble
229 F A 0.0000 Buried
230 N A -2.4944 Soluble
231 R A -2.6157 Soluble
232 G A -1.6109 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
Load structure to view sequence…
Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.8695 2.1169 CSV PDB
4.5 -0.908 2.1032 CSV PDB
5.0 -0.9528 2.089 CSV PDB
5.5 -0.9932 2.0818 CSV PDB
6.0 -1.0155 2.096 CSV PDB
6.5 -1.0096 2.1507 CSV PDB
7.0 -0.9762 2.2511 CSV PDB
7.5 -0.9251 2.3813 CSV PDB
8.0 -0.8648 2.5246 CSV PDB
8.5 -0.7987 2.6724 CSV PDB
9.0 -0.7275 2.8212 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH