Vopikitug / 6yio

A4DAB301_6yio_H_L | Source PDB: 6yio | Chains: H, L | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.6414
Max Score
2.7432
Min Score
-3.8522
Total Score
-275.15
Score CDR
0.1194
Score non-CDR
-0.7395

Calculation Parameters

Chain Sequence(s) QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSLAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARGGSVSGTLVDFDIWGQGTMVTVSSASTKGPSVFPLAPGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKDIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNIYPITFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE input.pdb
Selected Chain(s) H (Heavy), L (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.8522
Maximum Score 2.7432
Average Score -0.6414
Total Score -275.1519

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
1 Q H -1.4982 Soluble
2 V H -1.1087 Soluble
3 Q H -1.5831 Soluble
4 L H 0.0000 Buried
5 V H -0.1660 Soluble
6 Q H 0.0000 Buried
7 S H -0.6383 Soluble
8 G H -0.6295 Soluble
9 A H -0.1219 Soluble
11 E H -0.4098 Soluble
12 V H 0.2799 Aggregation-prone
13 K H -1.1817 Soluble
14 K H -2.2749 Soluble
15 P H -2.3077 Soluble
16 G H -1.6582 Soluble
17 S H -1.2956 Soluble
18 S H -1.4056 Soluble
19 V H 0.0000 Buried
20 K H -2.0489 Soluble
21 V H 0.0000 Buried
22 S H -0.5613 Soluble
23 C H 0.0000 Buried
24 K H -1.0163 Soluble
25 A H 0.0000 Buried
26 S H -0.9864 Soluble
27 G H -1.3049 Soluble
28 G H -1.1838 Soluble
29 T H -0.8066 Soluble
30 F H 0.0000 Buried
35 S H 0.2847 Aggregation-prone
36 S H 1.1541 Aggregation-prone
37 L H 0.9889 Aggregation-prone
38 A H 0.0000 Buried
39 I H 0.0000 Buried
40 S H 0.0000 Buried
41 W H 0.0000 Buried
42 V H 0.0000 Buried
43 R H -0.4091 Soluble
44 Q H -0.6666 Soluble
45 A H -1.0008 Soluble
46 P H -0.8135 Soluble
47 G H -1.2474 Soluble
48 Q H -1.7580 Soluble
49 G H -1.1664 Soluble
50 L H 0.0000 Buried
51 E H -0.7203 Soluble
52 W H 0.0000 Buried
53 M H 0.0000 Buried
54 G H 0.0000 Buried
55 G H 0.0000 Buried
56 I H 0.0000 Buried
57 I H 1.2472 Aggregation-prone
58 P H 0.0000 Buried
59 I H 2.4879 Aggregation-prone
62 F H 2.7432 Aggregation-prone
63 G H 0.9904 Aggregation-prone
64 T H 0.5905 Aggregation-prone
65 A H 0.1127 Aggregation-prone
66 N H -0.0773 Soluble
67 Y H -0.3256 Soluble
68 A H 0.0000 Buried
69 Q H -2.3515 Soluble
70 K H -2.7136 Soluble
71 F H 0.0000 Buried
72 Q H -2.4080 Soluble
74 G H -1.6677 Soluble
75 R H -1.4861 Soluble
76 V H 0.0000 Buried
77 T H -0.5931 Soluble
78 I H 0.0000 Buried
79 T H -0.3571 Soluble
80 A H -0.2172 Soluble
81 D H -1.1285 Soluble
82 E H -1.0167 Soluble
83 S H -0.7228 Soluble
84 T H -0.8610 Soluble
85 S H 0.0000 Buried
86 T H 0.0000 Buried
87 A H 0.0000 Buried
88 Y H -0.5017 Soluble
89 M H 0.0000 Buried
90 E H -1.4688 Soluble
91 L H 0.0000 Buried
92 S H -1.1833 Soluble
93 S H -1.2477 Soluble
94 L H 0.0000 Buried
95 R H -3.1230 Soluble
96 S H -2.3681 Soluble
97 E H -2.5245 Soluble
98 D H 0.0000 Buried
99 T H -0.9043 Soluble
100 A H 0.0000 Buried
101 V H 0.2100 Aggregation-prone
102 Y H 0.0000 Buried
103 Y H 0.0000 Buried
104 C H 0.0000 Buried
105 A H 0.0000 Buried
106 R H -0.3284 Soluble
107 G H 0.0000 Buried
108 G H 0.0322 Aggregation-prone
109 S H 0.5722 Aggregation-prone
110 V H 1.6447 Aggregation-prone
111 S H 0.6401 Aggregation-prone
111A G H 0.5913 Aggregation-prone
112A T H 0.0000 Buried
112 L H 0.7433 Aggregation-prone
113 V H 0.0000 Buried
114 D H 0.0000 Buried
115 F H 0.0000 Buried
116 D H -0.5968 Soluble
117 I H -0.5782 Soluble
118 W H -0.6499 Soluble
119 G H 0.0000 Buried
120 Q H -1.5371 Soluble
121 G H -0.7664 Soluble
122 T H 0.0000 Buried
123 M H 0.1566 Aggregation-prone
124 V H 0.0000 Buried
125 T H 0.0000 Buried
126 V H 0.0000 Buried
127 S H -1.2943 Soluble
128 S H -1.0977 Soluble
129 A H -0.5624 Soluble
130 S H -0.6152 Soluble
131 T H -0.5540 Soluble
132 K H -1.1769 Soluble
133 G H -1.3098 Soluble
134 P H 0.0000 Buried
135 S H -0.4046 Soluble
136 V H 0.0000 Buried
137 F H 0.0000 Buried
138 P H -1.3775 Soluble
139 L H 0.0000 Buried
140 A H -1.2823 Soluble
141 P H -0.8014 Soluble
142 G H -0.6382 Soluble
143 T H -0.4860 Soluble
144 A H -0.2295 Soluble
145 A H 0.0000 Buried
146 L H 0.0000 Buried
147 G H 0.0000 Buried
148 C H 0.0000 Buried
149 L H 0.0000 Buried
150 V H 0.0000 Buried
151 K H 0.0000 Buried
152 D H -0.3915 Soluble
153 Y H 0.0000 Buried
154 F H 0.0000 Buried
155 P H 0.0000 Buried
156 E H -0.7766 Soluble
157 P H -1.0036 Soluble
158 V H -0.7594 Soluble
159 T H -0.5649 Soluble
160 V H -0.1156 Soluble
161 S H -0.3850 Soluble
162 W H 0.0000 Buried
163 N H -0.8400 Soluble
164 S H -0.6986 Soluble
165 G H -0.5692 Soluble
166 A H -0.2848 Soluble
167 L H -0.0732 Soluble
168 T H -0.1935 Soluble
169 S H -0.3740 Soluble
170 G H -0.4309 Soluble
171 V H 0.1344 Aggregation-prone
172 H H 0.0000 Buried
173 T H 0.0711 Aggregation-prone
174 F H 0.0000 Buried
175 P H -0.3895 Soluble
176 A H 0.0485 Aggregation-prone
177 V H 0.4056 Aggregation-prone
178 L H 1.1405 Aggregation-prone
179 Q H 0.2851 Aggregation-prone
180 S H -0.0418 Soluble
181 S H -0.1788 Soluble
182 G H 0.0449 Aggregation-prone
183 L H 0.0534 Aggregation-prone
184 Y H 0.0000 Buried
185 S H 0.0000 Buried
186 L H 0.0000 Buried
187 S H 0.0000 Buried
188 S H 0.0000 Buried
189 V H 0.0000 Buried
190 V H 0.0000 Buried
191 T H -0.1342 Soluble
192 V H 0.0000 Buried
193 P H -0.4601 Soluble
194 S H -0.5062 Soluble
195 S H -0.6093 Soluble
196 S H 0.0000 Buried
197 L H -0.8159 Soluble
198 G H -0.9701 Soluble
199 T H -0.7979 Soluble
200 Q H -1.3757 Soluble
201 T H -1.3544 Soluble
202 Y H 0.0000 Buried
203 I H -1.3634 Soluble
204 C H 0.0000 Buried
205 N H -1.4141 Soluble
206 V H 0.0000 Buried
207 N H -1.7781 Soluble
208 H H 0.0000 Buried
209 K H -2.7580 Soluble
210 P H -1.6977 Soluble
211 S H -1.7979 Soluble
212 N H -2.5675 Soluble
213 T H -2.0291 Soluble
214 K H -2.5901 Soluble
215 V H -1.4466 Soluble
216 D H -2.2600 Soluble
217 K H -2.0631 Soluble
218 K H -2.5811 Soluble
219 V H 0.0000 Buried
220 E H -3.0273 Soluble
221 P H -2.1904 Soluble
222 K H -2.5623 Soluble
1 D L -1.9684 Soluble
2 I L 0.0000 Buried
3 Q L -2.1224 Soluble
4 M L 0.0000 Buried
5 T L -1.0606 Soluble
6 Q L 0.0000 Buried
7 S L -0.6611 Soluble
8 P L -0.5780 Soluble
9 S L -0.7952 Soluble
10 T L -0.7818 Soluble
11 L L -0.5131 Soluble
12 S L -0.8395 Soluble
13 A L 0.0000 Buried
14 S L -0.3621 Soluble
15 V L 0.4527 Aggregation-prone
16 G L -0.6656 Soluble
17 D L -1.5301 Soluble
18 R L -2.2486 Soluble
19 V L 0.0000 Buried
20 T L -0.5116 Soluble
21 I L 0.0000 Buried
22 T L -0.7145 Soluble
23 C L 0.0000 Buried
24 R L -2.0118 Soluble
25 A L 0.0000 Buried
26 S L -1.8625 Soluble
27 Q L -2.1470 Soluble
28 S L -1.3091 Soluble
29 I L 0.0000 Buried
36 S L -0.7892 Soluble
37 S L -0.6497 Soluble
38 W L 0.1618 Aggregation-prone
39 L L 0.0000 Buried
40 A L 0.0000 Buried
41 W L 0.0000 Buried
42 Y L 0.0000 Buried
43 Q L 0.0000 Buried
44 Q L -1.3657 Soluble
45 K L -1.8274 Soluble
46 P L -1.5810 Soluble
47 G L -1.6819 Soluble
48 K L -2.6226 Soluble
49 A L -1.6350 Soluble
50 P L 0.0000 Buried
51 K L -1.4500 Soluble
52 L L 0.0000 Buried
53 L L 0.0000 Buried
54 I L 0.0000 Buried
55 Y L -0.2023 Soluble
56 K L -0.7811 Soluble
57 A L 0.0000 Buried
65 S L -0.5216 Soluble
66 S L -0.2711 Soluble
67 L L 0.0548 Aggregation-prone
68 E L -0.3771 Soluble
69 S L -0.4386 Soluble
70 G L -0.5134 Soluble
71 V L -0.3565 Soluble
72 P L -0.3599 Soluble
74 S L -0.4657 Soluble
75 R L -0.8971 Soluble
76 F L 0.0000 Buried
77 S L -0.3903 Soluble
78 G L -0.4106 Soluble
79 S L -0.8824 Soluble
80 G L -1.2694 Soluble
83 S L -1.1461 Soluble
84 G L -1.1828 Soluble
85 T L -1.7341 Soluble
86 E L -2.4136 Soluble
87 F L 0.0000 Buried
88 T L -0.7401 Soluble
89 L L 0.0000 Buried
90 T L -0.6645 Soluble
91 I L 0.0000 Buried
92 S L -1.3457 Soluble
93 S L -1.1706 Soluble
94 L L 0.0000 Buried
95 Q L -0.9063 Soluble
96 P L -0.8490 Soluble
97 D L -1.8813 Soluble
98 D L 0.0000 Buried
99 F L -0.4990 Soluble
100 A L 0.0000 Buried
101 T L -0.9485 Soluble
102 Y L 0.0000 Buried
103 Y L 0.0000 Buried
104 C L 0.0000 Buried
105 Q L 0.0000 Buried
106 Q L 0.0000 Buried
107 Y L 0.0000 Buried
108 N L 0.5489 Aggregation-prone
109 I L 1.2561 Aggregation-prone
114 Y L 0.7313 Aggregation-prone
115 P L -0.1681 Soluble
116 I L 0.0000 Buried
117 T L -0.5049 Soluble
118 F L 0.0000 Buried
119 G L 0.0000 Buried
120 G L -1.1540 Soluble
121 G L -0.9751 Soluble
122 T L 0.0000 Buried
123 K L -1.6336 Soluble
124 V L 0.0000 Buried
125 E L 0.0000 Buried
126 I L -0.2563 Soluble
127 K L -1.1930 Soluble
128 R L -0.9797 Soluble
129 T L -0.0510 Soluble
130 V L 0.5271 Aggregation-prone
131 A L 0.2509 Aggregation-prone
132 A L -0.0585 Soluble
133 P L 0.0000 Buried
134 S L -0.1438 Soluble
135 V L 0.0000 Buried
136 F L 0.0409 Aggregation-prone
137 I L 0.0591 Aggregation-prone
138 F L 0.0000 Buried
139 P L -0.4869 Soluble
140 P L 0.0000 Buried
141 S L -1.8812 Soluble
142 D L -3.1798 Soluble
143 E L -3.0575 Soluble
144 Q L 0.0000 Buried
145 L L -2.3469 Soluble
146 K L -2.8922 Soluble
147 S L -1.7657 Soluble
148 G L -1.2635 Soluble
149 T L -0.9086 Soluble
150 A L 0.0000 Buried
151 S L 0.0000 Buried
152 V L 0.0000 Buried
153 V L 0.0000 Buried
154 C L 0.0000 Buried
155 L L 0.0000 Buried
156 L L 0.0000 Buried
157 N L 0.0000 Buried
158 N L -0.8614 Soluble
159 F L 0.0000 Buried
160 Y L 0.0000 Buried
161 P L -1.7250 Soluble
162 R L -3.1569 Soluble
163 E L -3.2800 Soluble
164 A L -2.3368 Soluble
165 K L -2.3563 Soluble
166 V L -1.1269 Soluble
167 Q L -0.7116 Soluble
168 W L 0.0000 Buried
169 K L -0.6246 Soluble
170 V L 0.0000 Buried
171 D L -1.9916 Soluble
172 N L -1.5371 Soluble
173 A L -0.2561 Soluble
174 L L 0.7161 Aggregation-prone
175 Q L -0.0796 Soluble
176 S L -0.3956 Soluble
177 G L -0.8950 Soluble
178 N L -0.8111 Soluble
179 S L -1.1823 Soluble
180 Q L -1.5006 Soluble
181 E L -2.0363 Soluble
182 S L -1.1045 Soluble
183 V L -0.9120 Soluble
184 T L -1.1963 Soluble
185 E L -2.2820 Soluble
186 Q L -1.8428 Soluble
187 D L -1.8915 Soluble
188 S L -1.6990 Soluble
189 K L -2.2616 Soluble
190 D L -1.6147 Soluble
191 S L -1.6038 Soluble
192 T L 0.0000 Buried
193 Y L 0.0000 Buried
194 S L 0.0000 Buried
195 L L 0.0000 Buried
196 S L 0.0000 Buried
197 S L 0.0000 Buried
198 T L -0.7169 Soluble
199 L L 0.0000 Buried
200 T L -0.3369 Soluble
201 L L -0.7696 Soluble
202 S L -1.2034 Soluble
203 K L -2.2736 Soluble
204 A L -2.0934 Soluble
205 D L -2.8782 Soluble
206 Y L 0.0000 Buried
207 E L -3.8053 Soluble
208 K L -3.8522 Soluble
209 H L -3.0872 Soluble
210 K L -3.1685 Soluble
211 V L -1.2433 Soluble
212 Y L 0.0000 Buried
213 A L 0.0000 Buried
214 C L 0.0000 Buried
215 E L -1.1007 Soluble
216 V L 0.0000 Buried
217 T L -1.2560 Soluble
218 H L 0.0000 Buried
219 Q L -1.5617 Soluble
220 G L -0.3673 Soluble
221 L L -0.1760 Soluble
222 S L -0.4401 Soluble
223 S L -0.4103 Soluble
224 P L -0.5716 Soluble
225 V L 0.0110 Aggregation-prone
226 T L -0.5974 Soluble
227 K L -0.8593 Soluble
228 S L -0.5629 Soluble
229 F L -0.8100 Soluble
230 N L -1.6949 Soluble
231 R L -2.4369 Soluble
232 G L -2.0890 Soluble
233 E L -2.4508 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
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Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.6768 5.7319 CSV PDB
4.5 -0.7172 5.7319 CSV PDB
5.0 -0.7641 5.7319 CSV PDB
5.5 -0.8075 5.7319 CSV PDB
6.0 -0.8351 5.7319 CSV PDB
6.5 -0.8377 5.7319 CSV PDB
7.0 -0.8152 5.7319 CSV PDB
7.5 -0.7761 5.7319 CSV PDB
8.0 -0.7278 5.7319 CSV PDB
8.5 -0.6732 5.7319 CSV PDB
9.0 -0.6131 5.7319 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH