Gremubamab / 6cyf

A4DAB136_6cyf_F_E | Source PDB: 6cyf | Chains: F, E | Done
98.7
Yes
10 Å
Yes
Avg A4D Score
-0.6765
Max Score
1.8346
Min Score
-3.3416
Total Score
-295.62
Score CDR
-0.1788
Score non-CDR
-0.7422

Calculation Parameters

Chain Sequence(s) EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMDWVRQAPGKGLEWVSAITMSGITAYYTDDVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKEEFLPGTHYFYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKAIQMTQSPSSLSASVGDRVTITCRASQGIRNDLGWYQQKPGKAPKLLIYSASTLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCLQDYNYPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC input.pdb
Selected Chain(s) F (Heavy), E (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.3416
Maximum Score 1.8346
Average Score -0.6765
Total Score -295.6182

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
1 E F -2.0475 Soluble
2 V F -1.1362 Soluble
3 Q F -1.2439 Soluble
4 L F 0.0000 Buried
5 V F 0.9710 Aggregation-prone
6 E F 0.0000 Buried
7 S F -0.4831 Soluble
8 G F -1.1448 Soluble
9 G F -0.6701 Soluble
11 G F -0.2591 Soluble
12 L F 0.2397 Aggregation-prone
13 V F -0.3582 Soluble
14 Q F -1.4330 Soluble
15 P F -1.6407 Soluble
16 G F -1.4164 Soluble
17 G F -1.1348 Soluble
18 S F -1.4231 Soluble
19 L F -1.3137 Soluble
20 R F -2.3830 Soluble
21 L F 0.0000 Buried
22 S F -0.4737 Soluble
23 C F 0.0000 Buried
24 A F -0.0963 Soluble
25 A F 0.0000 Buried
26 S F -0.8099 Soluble
27 G F -1.1336 Soluble
28 F F -0.4522 Soluble
29 T F -0.1776 Soluble
30 F F 0.0000 Buried
35 S F -0.6494 Soluble
36 S F -0.2461 Soluble
37 Y F 0.0801 Aggregation-prone
38 A F -0.0028 Soluble
39 M F 0.0000 Buried
40 D F 0.0000 Buried
41 W F 0.0000 Buried
42 V F 0.0000 Buried
43 R F 0.0000 Buried
44 Q F -0.8135 Soluble
45 A F -1.1995 Soluble
46 P F -0.9729 Soluble
47 G F -1.5121 Soluble
48 K F -2.3904 Soluble
49 G F -1.6599 Soluble
50 L F 0.0000 Buried
51 E F -1.2453 Soluble
52 W F 0.0000 Buried
53 V F 0.0000 Buried
54 S F 0.0000 Buried
55 A F 0.0000 Buried
56 I F 0.0000 Buried
57 T F 0.3475 Aggregation-prone
58 M F 0.1272 Aggregation-prone
59 S F 0.2372 Aggregation-prone
62 G F 0.4842 Aggregation-prone
63 I F 1.8346 Aggregation-prone
64 T F 0.9643 Aggregation-prone
65 A F 0.6556 Aggregation-prone
66 Y F 0.1660 Aggregation-prone
67 Y F -0.6336 Soluble
68 T F 0.0000 Buried
69 D F -2.5275 Soluble
70 D F -2.1782 Soluble
71 V F 0.0000 Buried
72 K F -2.6069 Soluble
74 G F -1.8735 Soluble
75 R F -1.6355 Soluble
76 F F 0.0000 Buried
77 T F -0.9741 Soluble
78 I F 0.0000 Buried
79 S F -0.1408 Soluble
80 R F -0.7094 Soluble
81 D F -1.5493 Soluble
82 N F -1.6421 Soluble
83 S F -1.5576 Soluble
84 K F -2.3583 Soluble
85 N F -1.7150 Soluble
86 T F -0.9927 Soluble
87 L F 0.0000 Buried
88 Y F -0.6553 Soluble
89 L F 0.0000 Buried
90 Q F -1.6457 Soluble
91 M F 0.0000 Buried
92 N F -2.1586 Soluble
93 S F -1.5090 Soluble
94 L F 0.0000 Buried
95 R F -2.0006 Soluble
96 A F -1.5210 Soluble
97 E F -2.1464 Soluble
98 D F 0.0000 Buried
99 T F -0.6605 Soluble
100 A F 0.0000 Buried
101 V F 0.2166 Aggregation-prone
102 Y F 0.0000 Buried
103 Y F 0.0000 Buried
104 C F 0.0000 Buried
105 A F 0.0000 Buried
106 K F 0.0000 Buried
107 E F 0.0000 Buried
108 E F -0.0043 Soluble
109 F F 0.2957 Aggregation-prone
110 L F 0.4174 Aggregation-prone
111 P F -0.2901 Soluble
111A G F -0.5563 Soluble
111B T F -0.3405 Soluble
112B H F -0.5015 Soluble
112A Y F 0.5169 Aggregation-prone
112 F F 0.8802 Aggregation-prone
113 Y F 0.4947 Aggregation-prone
114 G F 0.0000 Buried
115 M F 0.0000 Buried
116 D F -0.7852 Soluble
117 V F -0.4602 Soluble
118 W F 0.0000 Buried
119 G F 0.0000 Buried
120 Q F -1.3297 Soluble
121 G F 0.0000 Buried
122 T F -0.1483 Soluble
123 T F -0.0978 Soluble
124 V F 0.0000 Buried
125 T F -0.4357 Soluble
126 V F 0.0000 Buried
127 S F -0.8625 Soluble
128 S F -0.6973 Soluble
129 A F -0.4843 Soluble
130 S F -0.5950 Soluble
131 T F -0.8407 Soluble
132 K F -1.3555 Soluble
133 G F -1.4961 Soluble
134 P F -0.7356 Soluble
135 S F -0.2977 Soluble
136 V F 0.0000 Buried
137 F F 0.0000 Buried
138 P F -1.1786 Soluble
139 L F 0.0000 Buried
140 A F -1.1390 Soluble
141 P F 0.0000 Buried
142 S F -0.8934 Soluble
143 S F -1.4746 Soluble
144 K F -1.9876 Soluble
145 S F -1.3966 Soluble
146 G F -0.8160 Soluble
147 G F -0.9905 Soluble
148 T F -0.7445 Soluble
149 A F 0.0000 Buried
150 A F 0.0000 Buried
151 L F 0.0000 Buried
152 G F 0.0000 Buried
153 C F 0.0000 Buried
154 L F 0.0000 Buried
155 V F 0.0000 Buried
156 K F 0.0000 Buried
157 D F -0.4873 Soluble
158 Y F 0.0000 Buried
159 F F 0.0000 Buried
160 P F 0.0000 Buried
161 E F -1.1142 Soluble
162 P F -1.2079 Soluble
163 V F -1.0554 Soluble
164 T F -0.8613 Soluble
165 V F -0.4862 Soluble
166 S F -0.4507 Soluble
167 W F 0.0000 Buried
168 N F -0.6645 Soluble
169 S F -0.5914 Soluble
170 G F -0.5783 Soluble
171 A F -0.2439 Soluble
172 L F -0.0191 Soluble
173 T F -0.1922 Soluble
174 S F -0.1961 Soluble
175 G F -0.2337 Soluble
176 V F 0.1221 Aggregation-prone
177 H F -0.2750 Soluble
178 T F 0.0447 Aggregation-prone
179 F F 0.0000 Buried
180 P F -0.3179 Soluble
181 A F 0.0376 Aggregation-prone
182 V F 0.4309 Aggregation-prone
183 L F 1.0780 Aggregation-prone
184 Q F 0.2421 Aggregation-prone
185 S F -0.0446 Soluble
186 S F -0.2002 Soluble
187 G F 0.0121 Aggregation-prone
188 L F -0.0459 Soluble
189 Y F 0.0000 Buried
190 S F 0.0000 Buried
191 L F 0.0000 Buried
192 S F 0.0000 Buried
193 S F 0.0000 Buried
194 V F 0.0000 Buried
195 V F 0.0000 Buried
196 T F -0.1519 Soluble
197 V F 0.0000 Buried
198 P F -0.5355 Soluble
199 S F -0.7913 Soluble
200 S F -0.6944 Soluble
201 S F -0.6325 Soluble
202 L F -0.7562 Soluble
203 G F -0.9619 Soluble
204 T F -0.7096 Soluble
205 Q F -1.1852 Soluble
206 T F -1.1148 Soluble
207 Y F 0.0000 Buried
208 I F -1.0943 Soluble
209 C F 0.0000 Buried
210 N F -1.4363 Soluble
211 V F 0.0000 Buried
212 N F -2.4811 Soluble
213 H F 0.0000 Buried
214 K F -2.9523 Soluble
215 P F -1.7770 Soluble
216 S F -1.9449 Soluble
217 N F -2.6674 Soluble
218 T F -2.2255 Soluble
219 K F -2.7754 Soluble
220 V F -1.3434 Soluble
221 D F -1.9882 Soluble
222 K F -1.7621 Soluble
223 K F -2.4798 Soluble
224 V F 0.0000 Buried
225 E F -2.8313 Soluble
226 P F -2.0734 Soluble
227 K F -2.0756 Soluble
1 A E -0.7101 Soluble
2 I E 0.0000 Buried
3 Q E -1.8174 Soluble
4 M E 0.0000 Buried
5 T E -1.3471 Soluble
6 Q E 0.0000 Buried
7 S E -0.7878 Soluble
8 P E -0.4581 Soluble
9 S E -0.8097 Soluble
10 S E -0.6486 Soluble
11 L E -0.4124 Soluble
12 S E -0.7879 Soluble
13 A E 0.0000 Buried
14 S E -0.5625 Soluble
15 V E 0.2092 Aggregation-prone
16 G E -0.7742 Soluble
17 D E -1.6809 Soluble
18 R E -2.2988 Soluble
19 V E 0.0000 Buried
20 T E -0.5975 Soluble
21 I E 0.0000 Buried
22 T E -0.7452 Soluble
23 C E 0.0000 Buried
24 R E -2.4710 Soluble
25 A E -1.9763 Soluble
26 S E -1.7434 Soluble
27 Q E -2.3389 Soluble
28 G E -2.0595 Soluble
29 I E 0.0000 Buried
36 R E -2.6181 Soluble
37 N E -1.8969 Soluble
38 D E 0.0000 Buried
39 L E 0.0000 Buried
40 G E 0.0000 Buried
41 W E 0.0000 Buried
42 Y E 0.0000 Buried
43 Q E 0.0000 Buried
44 Q E 0.0000 Buried
45 K E -1.7883 Soluble
46 P E -1.5853 Soluble
47 G E -1.6999 Soluble
48 K E -2.6214 Soluble
49 A E -1.7620 Soluble
50 P E 0.0000 Buried
51 K E -1.9534 Soluble
52 L E 0.0000 Buried
53 L E 0.0000 Buried
54 I E 0.0000 Buried
55 Y E 0.0518 Aggregation-prone
56 S E -0.4078 Soluble
57 A E 0.0000 Buried
65 S E -0.3904 Soluble
66 T E 0.0250 Aggregation-prone
67 L E 0.2036 Aggregation-prone
68 Q E -0.3903 Soluble
69 S E -0.3814 Soluble
70 G E -0.5048 Soluble
71 V E -0.3727 Soluble
72 P E -0.3454 Soluble
74 S E -0.4328 Soluble
75 R E -0.7889 Soluble
76 F E 0.0000 Buried
77 S E -0.2995 Soluble
78 G E -0.2435 Soluble
79 S E -0.6732 Soluble
80 G E -1.3845 Soluble
83 S E -1.6610 Soluble
84 G E -2.1238 Soluble
85 T E -2.1864 Soluble
86 D E -2.4005 Soluble
87 F E 0.0000 Buried
88 T E -0.6680 Soluble
89 L E 0.0000 Buried
90 T E -0.5762 Soluble
91 I E 0.0000 Buried
92 S E -1.3139 Soluble
93 S E -1.1225 Soluble
94 L E 0.0000 Buried
95 Q E -0.8116 Soluble
96 P E -0.8587 Soluble
97 E E -1.8750 Soluble
98 D E 0.0000 Buried
99 F E -0.4610 Soluble
100 A E -0.7449 Soluble
101 T E -0.8628 Soluble
102 Y E 0.0000 Buried
103 Y E 0.0000 Buried
104 C E 0.0000 Buried
105 L E 0.0000 Buried
106 Q E 0.0000 Buried
107 D E 0.0000 Buried
108 Y E -0.0231 Soluble
109 N E -0.3922 Soluble
114 Y E 0.0715 Aggregation-prone
115 P E -0.2303 Soluble
116 W E 0.0000 Buried
117 T E -0.5706 Soluble
118 F E 0.0000 Buried
119 G E 0.0000 Buried
120 Q E -1.7437 Soluble
121 G E 0.0000 Buried
122 T E 0.0000 Buried
123 K E -1.3065 Soluble
124 V E 0.0000 Buried
125 E E 0.0000 Buried
126 I E -0.4671 Soluble
127 K E -1.4031 Soluble
128 R E -1.0414 Soluble
129 T E -0.1117 Soluble
130 V E 0.5343 Aggregation-prone
131 A E 0.1683 Aggregation-prone
132 A E -0.1263 Soluble
133 P E 0.0000 Buried
134 S E -0.1852 Soluble
135 V E 0.0000 Buried
136 F E -0.0232 Soluble
137 I E 0.0217 Aggregation-prone
138 F E 0.0000 Buried
139 P E -0.5259 Soluble
140 P E 0.0000 Buried
141 S E -1.7983 Soluble
142 D E -2.9150 Soluble
143 E E -2.9730 Soluble
144 Q E 0.0000 Buried
145 L E -2.1997 Soluble
146 K E -2.7764 Soluble
147 S E -1.7315 Soluble
148 G E -1.2444 Soluble
149 T E -0.8256 Soluble
150 A E 0.0000 Buried
151 S E 0.0000 Buried
152 V E 0.0000 Buried
153 V E 0.0000 Buried
154 C E 0.0000 Buried
155 L E 0.0000 Buried
156 L E 0.0000 Buried
157 N E -0.3681 Soluble
158 N E -0.7175 Soluble
159 F E 0.0000 Buried
160 Y E 0.0000 Buried
161 P E -1.2928 Soluble
162 R E -1.8546 Soluble
163 E E -2.7142 Soluble
164 A E -2.0473 Soluble
165 K E -2.2083 Soluble
166 V E -1.0272 Soluble
167 Q E -0.4631 Soluble
168 W E 0.0000 Buried
169 K E -0.4411 Soluble
170 V E 0.0000 Buried
171 D E -1.7387 Soluble
172 N E -1.3169 Soluble
173 A E -0.2420 Soluble
174 L E 0.7477 Aggregation-prone
175 Q E -0.1479 Soluble
176 S E -0.3686 Soluble
177 G E -0.9189 Soluble
178 N E -0.8314 Soluble
179 S E -1.1995 Soluble
180 Q E -1.5639 Soluble
181 E E -1.9371 Soluble
182 S E -0.6504 Soluble
183 V E -0.2042 Soluble
184 T E -0.8251 Soluble
185 E E -2.0045 Soluble
186 Q E -1.5522 Soluble
187 D E -1.8060 Soluble
188 S E -1.6019 Soluble
189 K E -2.1852 Soluble
190 D E -1.5496 Soluble
191 S E -1.5917 Soluble
192 T E 0.0000 Buried
193 Y E 0.0000 Buried
194 S E 0.0000 Buried
195 L E 0.0000 Buried
196 S E 0.0000 Buried
197 S E 0.0000 Buried
198 T E -0.6880 Soluble
199 L E 0.0000 Buried
200 T E -0.4299 Soluble
201 L E -0.5853 Soluble
202 S E -1.1387 Soluble
203 K E -1.9482 Soluble
204 A E -1.7242 Soluble
205 D E -2.3679 Soluble
206 Y E 0.0000 Buried
207 E E -3.1041 Soluble
208 K E -3.3416 Soluble
209 H E -2.8343 Soluble
210 K E -2.9199 Soluble
211 V E -1.2954 Soluble
212 Y E 0.0000 Buried
213 A E 0.0000 Buried
214 C E 0.0000 Buried
215 E E -0.6939 Soluble
216 V E 0.0000 Buried
217 T E -1.1749 Soluble
218 H E 0.0000 Buried
219 Q E -1.6705 Soluble
220 G E -0.4884 Soluble
221 L E -0.2993 Soluble
222 S E -0.4940 Soluble
223 S E -0.4230 Soluble
224 P E -0.4979 Soluble
225 V E -0.0027 Soluble
226 T E -0.5107 Soluble
227 K E -0.8911 Soluble
228 S E -0.6371 Soluble
229 F E -0.9199 Soluble
230 N E -1.8448 Soluble
231 R E -2.4166 Soluble
232 G E -1.9900 Soluble
233 E E -2.1955 Soluble
234 C E -0.8451 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
Load structure to view sequence…
Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.7226 2.5581 CSV PDB
4.5 -0.7604 2.5581 CSV PDB
5.0 -0.8039 2.5581 CSV PDB
5.5 -0.8435 2.5581 CSV PDB
6.0 -0.8677 2.5581 CSV PDB
6.5 -0.8673 2.5581 CSV PDB
7.0 -0.8432 2.5581 CSV PDB
7.5 -0.8045 2.5581 CSV PDB
8.0 -0.7585 2.5581 CSV PDB
8.5 -0.7073 2.5581 CSV PDB
9.0 -0.651 2.5581 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH