We translate

biology into numbers.

numbers into biology.

Fast simulations of protein flexibility?

Structural biology software

We develop and design computational tools for structural biology that include easy-to-use web servers and comprehensive standalone applications for advanced users.

Our web server apps

CABS-dock for protein-peptide docking, CABS-flex 2.0 for fast simulations of protein flexibility, Aggrescan3D for structure-based prediction of protein aggregation properties

Our standalone apps

CABS-flex simulation environment for fast modeling of protein flexibility, CABS-dock toolbox for modeling protein-peptide interactions, Aggrescan3D for structure-based design of soluble protein variants

Computational Biology Services

We provide computational biology services to academics and private partners. The services include broad range of computational support to biomedical research: modeling of proteins or their complexes (in particular protein-peptide complexes), structure prediction and dynamic simulations of biological systems, structure-based drug design, bioinformatics, biostatistics and big data analysis.

High Performance Computing

To provide computational services, we employ cyberinfrastructure of the University of Warsaw Biological and Chemical Research Centre (high performance computing cluster). The high capacity of our cluster (382 teraflops) open exciting possibilities for simulations of complex biological systems, big data analysis and other large-scale computations.

Join our team

We are constantly looking for motivated individuals to join our team or to remotely cooperate on defined goals. We offer trainings, support in pursuing scientific projects in different areas of computational biology, or a cozy desk in our facilities in Warsaw. The possibility of financial support depends on ongoing grants.

Recent publications

Modeling of Disordered Protein Structures Using Monte Carlo Simulations and Knowledge-Based Statistical Force Fields

The description of protein disordered states is important for understanding protein folding mechanisms and their fu(...) Read more

CABS-flex standalone: a simulation environment for fast modeling of protein flexibility

Summary: CABS-flex standalone is a Python package for fast simulations of protein structure flexibility. The packag(...) Read more

CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures

Classical simulations of protein flexibility remain computationally expensive, especially for large proteins. A few(...) Read more

Who we are?

We are group of life science researchers with different backgrounds: chemistry, bioinformatics, physics and medical sciences. We mainly work on development and applications of molecular modeling tools in biology and medicine. Our interests embrace broad aspects of computational biology, from molecular simulations to data analysis.