We develop and design computational tools for structural biology that include easy-to-use web servers and comprehensive standalone applications for advanced users.
CABS-dock for protein-peptide docking, CABS-flex 2.0 for fast simulations of protein flexibility, Aggrescan3D for structure-based prediction of protein aggregation properties
CABS-flex simulation environment for fast modeling of protein flexibility, CABS-dock toolbox for modeling protein-peptide interactions, Aggrescan3D for structure-based design of soluble protein variants
We provide computational biology services to academics and private partners. The services include broad range of computational support to biomedical research: modeling of proteins or their complexes (in particular protein-peptide complexes), structure prediction and dynamic simulations of biological systems, structure-based drug design, bioinformatics, biostatistics and big data analysis.
To provide computational services, we employ cyberinfrastructure of the University of Warsaw Biological and Chemical Research Centre (high performance computing cluster). The high capacity of our cluster (382 teraflops) open exciting possibilities for simulations of complex biological systems, big data analysis and other large-scale computations.
We are constantly looking for motivated individuals to join our team or to remotely cooperate on defined goals. We offer trainings, support in pursuing scientific projects in different areas of computational biology, or a cozy desk in our facilities in Warsaw. The possibility of financial support depends on ongoing grants.
The description of protein disordered states is important for understanding protein folding mechanisms and their fu(...) Read more
Summary: CABS-flex standalone is a Python package for fast simulations of protein structure flexibility. The packag(...) Read more
Classical simulations of protein flexibility remain computationally expensive, especially for large proteins. A few(...) Read more