Protein-peptide docking using CABS-dock and contact information

Briefings in Bioinformatics, 2018

Authors: Błaszczyk Maciej, Ciemny Maciej, Kolinski A., Kurciński Mateusz, Kmiecik Sebastian

Abstract

Short abstract: CABS-dock is a tool for flexible docking of peptides to proteins. In this article, we present a protocol for CABS-dock docking driven by information about protein-peptide contact(s). Using information on individual protein-peptide contacts allows to improve the accuracy of CABS-dock docking.

 

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We are group of life science researchers with different backgrounds: chemistry, bioinformatics, physics and medical sciences. We mainly work on development and applications of molecular modeling tools in biology and medicine. Our interests embrace broad aspects of computational biology, from molecular simulations to data analysis.

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