Sebastian Kmiecik

Head of the Laboratory

Employment:

2017 - today - Head of Laboratory of Computational Biology, Biological and Chemical Research Centre, University of Warsaw
2010 - today - Associate Professor at Laboratory of Theory of Biopolymers, Faculty of Chemistry, University of Warsaw
2007 - 2010 - Selvita company, Krakow - Partner/ Head of Computational Chemistry; Project Manager

Google Scholar citations, ORCID

Contact

Publications

70. MAPIYA contact map server for identification and visualization of molecular interactions in proteins and biological complexesNucleic Acids Research: gkac307, 2022Aleksandra E Badaczewska-Dawid, Chandran Nithin, Wróblewski Karol, Kurciński Mateusz, Kmiecik Sebastian
71. Molecular Dynamics Scoring of Protein–Peptide Models Derived from Coarse-Grained DockingMolecules, 26(11): 3293, 2021Zalewski Mateusz, Kmiecik Sebastian, Koliński Michał
72. Phosphorylation of the conserved C-terminal domain of ribosomal P-proteins impairs the mode of interaction with plant toxinsFebs Letters, 2021Horbowicz-Drożdżal Patrycja, Kamel Karol, Kmiecik Sebastian, Borkiewicz Lidia, Tumer Nilgun E., Shaw Pang-Chui, Tchórzewski Marek, Grela Przemysław
73. Protein-protein docking with large-scale backbone flexibility using coarse-grained Monte-Carlo simulationsInternational Journal of Molecular Sciences, 22(14): 7341, 2021Kurciński Mateusz, Kmiecik Sebastian, Zalewski Mateusz, Kolinski Andrzej
74. Protocols for rational design of protein solubility and aggregation properties using Aggrescan3D standaloneBiorxiv, doi: 10.1101/2020.09.09.276915, 2021Kuriata Aleksander, Badaczewska-Dawid Aleksandra E., Pujols Jordi, Ventura Salvador, Kmiecik Sebastian
75. Synthetic Transition from Thiourea-Based Compounds to Tetrazole Derivatives: Structure and Biological Evaluation of Synthesized New N-(Furan-2-ylmethyl)-1H-tetrazol-5-amine DerivativesMolecules, 26: 323, 2021Daniel Szulczyk, Anna Bielenica, Piotr Roszkowski, Michał A. Dobrowolski, Wioletta Olejarz, Kmiecik Sebastian, Małgorzata Podsiad, Marta Struga
76. Computational reconstruction of atomistic protein structures from coarse-grained modelsComputational and Structural Biotechnology Journal, 18: 162-176, 2020Badaczewska-Dawid Aleksandra, Kolinski Andrzej, Kmiecik Sebastian
77. Docking interactions determine early cleavage events in insulin proteolysis by pepsin: experiment and simulationInternational Journal of Biological Macromolecules, 2020Kolinski Michal, Kmiecik Sebastian, Dec Robert, Piejko Marcin, Mak Pawel, Dzwolak Wojciech
78. Docking of peptides to GPCRs using a combination of CABS-dock with FlexPepDock refinementBriefings In Bioinformatics, bbaa109, 2020Badaczewska-Dawid Aleksandra E, Kmiecik Sebastian, Koliński Michał
79. Flexible docking of peptides to proteins using CABS-dockProtein Science, 29: 211–222, 2020Kurciński Mateusz, Badaczewska-Dawid Aleksandra, Kolinski Michal, Kolinski Andrzej, Kmiecik Sebastian
80. Isoxazole-containing 5′ mRNA cap analogues as inhibitors of the translation initiation processBioorganic Chemistry, 96: 103583, 2020Piecyk Karolina, Lukaszewicz Maciej, Kamel Karol, Janowska Maria, Pietrow Paulina, Kmiecik Sebastian, Jankowska-Anyszka Marzena
81. Phosphorylation of the N-terminal domain of ribosomal P-stalk protein uL10 governs its association with the ribosomeFebs Letters, 594: 3002-3019, 2020Filipek Kamil, Michalec-Wawiórka Barbara, Boguszewska Aleksandra, Kmiecik Sebastian, Tchórzewski Marek
82. Protocols for all-atom reconstruction and high-resolution refinement of protein-peptide complex structuresMethods in Molecular Biology, 2165: 273-287, 2020Badaczewska-Dawid Aleksandra, Khramushin Alisa, Kolinski Andrzej, Schueler-Furman Ora, Kmiecik Sebastian
83. Protocols for fast simulations of protein structure flexibility using CABS-flex and SURPASSMethods in Molecular Biology, 2165: 337-353, 2020Badaczewska-Dawid Aleksandra, Kolinski Andrzej, Kmiecik Sebastian
84. Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubilityNucleic Acids Research, 47: W300-W307, 2019Kuriata Aleksander, Iglesias Valentin, Pujols Jordi, Kurciński Mateusz, Kmiecik Sebastian, Ventura Salvador

...And 55 more - see all publications of this author