Sebastian Kmiecik

Head of the Laboratory

Full Professor. Head of Laboratory of Computational Biology at Biological and Chemical Research Centre, University of Warsaw. Member of Laboratory of Theory of Biopolymers at Faculty of Chemistry, University of Warsaw.

Google Scholar citations, ORCID, SCOPUS 

Contact

Publications

92. Protein–Peptide Docking with ESMFold Language ModelJournal of Chemical Theory and Computation, 2025Zalewski Mateusz, Bjorn Wallner, Kmiecik Sebastian
93. A3D Model Organism Database (A3D-MODB): a database for proteome aggregation predictions in model organismsNucleic Acids Research, 52: D360-D367, 2024Badaczewska-Dawid Aleksandra E, Kuriata Aleksander, Pintado-Grima Carlos, Garcia-Pardo Javier, Burdukiewicz Michał, Iglesias Valentín, Kmiecik Sebastian, Ventura Salvador
94. Aggrescan4D: A comprehensive tool for pH-dependent analysis and engineering of protein aggregation propensityProtein Science, 33: e5180, 2024Zalewski Mateusz, Iglesias Valentin, Bárcenas Oriol, Ventura Salvador, Kmiecik Sebastian
95. Aggrescan4D: structure-informed analysis of pH-dependent protein aggregationNucleic Acids Research, : gkae382, 2024Bárcenas Oriol, Kuriata Aleksander, Zalewski Mateusz, Iglesias Valentín, Pintado-Grima Carlos, Firlik Grzegorz, Burdukiewicz Michał, Kmiecik Sebastian, Ventura Salvador
96. Antibacterial and anti-biofilm activities of new fluoroquinolone derivatives coupled with nitrogen-based heterocyclesBiomedicine & Pharmacotherapy, 179: 117439, 2024Piotr Roszkowski, Anna Bielenica, Joanna Stefańska, Anna Majewska, Kinga Markowska, Hanna Pituch, Michał Koliński, Kmiecik Sebastian, Alicja Chrzanowska, Marta Struga
97. Comparative analysis of RNA 3D structure prediction methods: towards enhanced modeling of RNA–ligand interactionsNucleic Acids Research, 52, 2024Chandran Nithin, Kmiecik Sebastian, Roman Błaszczyk, Julita Nowicka, Irina Tuszyńska
98. Delving into human α1,4-galactosyltransferase acceptor specificity: The role of enzyme dimerizationBiochemical And Biophysical Research Communications, 736: 150486, 2024Krzysztof Mikołajczyk, Wróblewski Karol, Kmiecik Sebastian
99. Efficient improvement of the proliferation, differentiation, and anti-arthritic capacity of mesenchymal stem cells by simply culturing on the immobilized FGF2 derived peptide, 44-ERGVVSIKGV-53Journal Of Advanced Research, 62: 119-141, 2024Soo Bin Lee, Ahmed Abdal Dayem, Kmiecik Sebastian, Kyung Min Lim, Dong Sik Seo, Hyeong-Taek Kim, Polash Kumar Biswas, Minjae Do, Deok-Ho Kim, Ssang-Goo Cho
100. Exploring protein functions from structural flexibility using CABS-flex modelingProtein Science, 33(9): :e509, 2024Chandran Nithin, Fornari Rocco, Pilla Smita, Wróblewski Karol, Zalewski Mateusz, Rafał Madaj, Andrzej Kolinski, Joanna M. Macnar, Kmiecik Sebastian
101. Integrating AlphaFold pLDDT Scores into CABS-flex for enhanced protein flexibility simulationsComputational And Structural Biotechnology Journal, 23: 4350-4356, 2024Wróblewski Karol, Kmiecik Sebastian
102. Phosphorylation of P-stalk proteins defines the ribosomal state for interaction with auxiliary protein factorsEmbo Reports, 25: 5478-5506, 2024Filipek Kamil, Blanchet Sandra, Molestak Eliza, Zaciura Monika, Wu Colin Chih-Chien, Patrycja Horbowicz-Drożdżal, Przemysław Grela, Zalewski Mateusz, Kmiecik Sebastian, Alan González-Ibarra, Dawid Krokowski, Przemysław Latoch, Agata L Starosta, Mateusz Mołoń, Yutian Shao, Lidia Borkiewicz, Barbara Michalec-Wawiórka, Leszek Wawiórka, Konrad Kubiński, Katarzyna Socała, Piotr Wlaź, Kyle W Cunningham, Rachel Green , Marina V Rodnina, Marek Tchórzewski
103. RNA-Puzzles Round V: blind predictions of 23 RNA structuresNature Methods, 2024Fan Bu, Yagoub Adam, Ryszard W. Adamiak, Maciej Antczak, Belisa Rebeca H. de Aquino, Nagendar Goud Badepally, Robert T. Batey, Eugene F. Baulin, Pawel Boinski, Michał J. Boniecki, Janusz M. Bujnicki, Kristy A. Carpenter, Jose Chacon, Shi-Jie Chen, Wah Chiu, Pablo Cordero, Naba Krishna Das, Rhiju Das, Wayne K. Dawson, Frank DiMaio, Feng Ding, Anne-Catherine Dock-Bregeon, Nikolay V. Dokholyan, Ron O. Dror, Stanisław Dunin-Horkawicz, Stephan Eismann, Eric Ennifar, Reza Esmaeeli, Masoud Amiri Farsani, Adrian R. Ferré-D’Amaré, Caleb Geniesse, George E. Ghanim, Horacio V. Guzman, Iris V. Hood, Lin Huang, Dharm Skandh Jain, Farhang Jaryani, Lei Jin, Astha Joshi, Masha Karelina, Jeffrey S. Kieft, Wipapat Kladwang, Kmiecik Sebastian, Deepak Koirala, Markus Kollmann, Rachael C. Kretsch, Kurciński Mateusz, Jun Li, Shuang Li, Marcin Magnus, BenoÎt Masquida, S. Naeim Moafinejad, Arup Mondal, Sunandan Mukherjee, Thi Hoang Duong Nguyen, Grigory Nikolaev, Chandran Nithin, Grace Nye, Iswarya P. N. Pandaranadar Jeyeram, Alberto Perez, Phillip Pham, Joseph A. Piccirilli, Pilla Smita, Radosław Pluta, Simón Poblete, Almudena Ponce-Salvatierra, Mariusz Popenda, Lukasz Popenda, Fabrizio Pucci, Ramya Rangan, Angana Ray, Aiming Ren, Joanna Sarzynska, Congzhou Mike Sha, Filip Stefaniak, Zhaoming Su, Krishna C. Suddala, Marta Szachniuk, Raphael Townshend, Robert J. Trachman III, Jian Wang, Wenkai Wang, Andrew Watkins, Tomasz K. Wirecki, Yi Xiao, Peng Xiong, Yiduo Xiong, Jianyi Yang, Joseph David Yesselman, Jinwei Zhang, Yi Zhang, Zhenzhen Zhang, Yuanzhe Zhou, Tomasz Zok, Dong Zhang, Sicheng Zhang, Adriana Żyła, Eric Westhof, Zhichao Miao
104. Structure prediction of linear and cyclic peptides using CABS-flexBriefings In Bioinformatics, 25: bbae003, 2024Badaczewska-Dawid Aleksandra, Wróblewski Karol, Kurciński Mateusz, Kmiecik Sebastian
105. The Synergistic Effect of N2 and N7 Modifications on the Inhibitory Efficacy of mRNA Cap AnaloguesPharmaceuticals, 17, 2024Kurpiejewski Karol, Piecyk Karolina, Lukaszewicz Maciej, Kamel Karol, Chmurski Kazimierz, Kmiecik Sebastian, Jankowska-Anyszka Marzena
106. A3DyDB: exploring structural aggregation propensities in the yeast proteomeMicrobial Cell Factories, 22: 186, 2023Javier Garcia-Pardo, Aleksandra E. Badaczewska-Dawid, Carlos Pintado-Grima, Valentin Iglesias, Kuriata Aleksander, Kmiecik Sebastian, Salvador Ventura

...And 77 more - see all publications of this author