Sebastian Kmiecik

Head of the Laboratory

Professor at University of Warsaw and head of Laboratory of Computational Biology at Biological and Chemical Research Centre, University of Warsaw. Member of Laboratory of Theory of Biopolymers at Faculty of Chemistry, University of Warsaw. Former employee and partner of Selvita biotechnology company.

Google Scholar citations, ORCID

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Publications

70. MAPIYA contact map server for identification and visualization of molecular interactions in proteins and biological complexesNucleic Acids Research: gkac307, 2022Aleksandra E Badaczewska-Dawid, Chandran Nithin, Wróblewski Karol, Kurciński Mateusz, Kmiecik Sebastian
71. Molecular Dynamics Scoring of Protein–Peptide Models Derived from Coarse-Grained DockingMolecules, 26(11): 3293, 2021Zalewski Mateusz, Kmiecik Sebastian, Koliński Michał
72. Phosphorylation of the conserved C-terminal domain of ribosomal P-proteins impairs the mode of interaction with plant toxinsFebs Letters, 2021Horbowicz-Drożdżal Patrycja, Kamel Karol, Kmiecik Sebastian, Borkiewicz Lidia, Tumer Nilgun E., Shaw Pang-Chui, Tchórzewski Marek, Grela Przemysław
73. Protein-protein docking with large-scale backbone flexibility using coarse-grained Monte-Carlo simulationsInternational Journal of Molecular Sciences, 22(14): 7341, 2021Kurciński Mateusz, Kmiecik Sebastian, Zalewski Mateusz, Kolinski Andrzej
74. Protocols for rational design of protein solubility and aggregation properties using Aggrescan3D standaloneBiorxiv, doi: 10.1101/2020.09.09.276915, 2021Kuriata Aleksander, Badaczewska-Dawid Aleksandra E., Pujols Jordi, Ventura Salvador, Kmiecik Sebastian
75. Synthetic Transition from Thiourea-Based Compounds to Tetrazole Derivatives: Structure and Biological Evaluation of Synthesized New N-(Furan-2-ylmethyl)-1H-tetrazol-5-amine DerivativesMolecules, 26: 323, 2021Daniel Szulczyk, Anna Bielenica, Piotr Roszkowski, Michał A. Dobrowolski, Wioletta Olejarz, Kmiecik Sebastian, Małgorzata Podsiad, Marta Struga
76. Computational reconstruction of atomistic protein structures from coarse-grained modelsComputational and Structural Biotechnology Journal, 18: 162-176, 2020Badaczewska-Dawid Aleksandra, Kolinski Andrzej, Kmiecik Sebastian
77. Docking interactions determine early cleavage events in insulin proteolysis by pepsin: experiment and simulationInternational Journal of Biological Macromolecules, 2020Kolinski Michal, Kmiecik Sebastian, Dec Robert, Piejko Marcin, Mak Pawel, Dzwolak Wojciech
78. Docking of peptides to GPCRs using a combination of CABS-dock with FlexPepDock refinementBriefings In Bioinformatics, bbaa109, 2020Badaczewska-Dawid Aleksandra E, Kmiecik Sebastian, Koliński Michał
79. Flexible docking of peptides to proteins using CABS-dockProtein Science, 29: 211–222, 2020Kurciński Mateusz, Badaczewska-Dawid Aleksandra, Kolinski Michal, Kolinski Andrzej, Kmiecik Sebastian
80. Isoxazole-containing 5′ mRNA cap analogues as inhibitors of the translation initiation processBioorganic Chemistry, 96: 103583, 2020Piecyk Karolina, Lukaszewicz Maciej, Kamel Karol, Janowska Maria, Pietrow Paulina, Kmiecik Sebastian, Jankowska-Anyszka Marzena
81. Phosphorylation of the N-terminal domain of ribosomal P-stalk protein uL10 governs its association with the ribosomeFebs Letters, 594: 3002-3019, 2020Filipek Kamil, Michalec-Wawiórka Barbara, Boguszewska Aleksandra, Kmiecik Sebastian, Tchórzewski Marek
82. Protocols for all-atom reconstruction and high-resolution refinement of protein-peptide complex structuresMethods in Molecular Biology, 2165: 273-287, 2020Badaczewska-Dawid Aleksandra, Khramushin Alisa, Kolinski Andrzej, Schueler-Furman Ora, Kmiecik Sebastian
83. Protocols for fast simulations of protein structure flexibility using CABS-flex and SURPASSMethods in Molecular Biology, 2165: 337-353, 2020Badaczewska-Dawid Aleksandra, Kolinski Andrzej, Kmiecik Sebastian
84. Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubilityNucleic Acids Research, 47: W300-W307, 2019Kuriata Aleksander, Iglesias Valentin, Pujols Jordi, Kurciński Mateusz, Kmiecik Sebastian, Ventura Salvador

...And 55 more - see all publications of this author