Sebastian Kmiecik

Head of the Laboratory

Professor at University of Warsaw and head of Laboratory of Computational Biology at Biological and Chemical Research Centre, University of Warsaw. 

Member of Laboratory of Theory of Biopolymers at Faculty of Chemistry, University of Warsaw. Former employee and partner of Selvita biotechnology company.

Google Scholar citations, ORCID

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Publications

88. A3D Model Organism Database (A3D-MODB): a database for proteome aggregation predictions in model organismsNucleic Acids Research, 52: D360-D367, 2024Badaczewska-Dawid Aleksandra E, Kuriata Aleksander, Pintado-Grima Carlos, Garcia-Pardo Javier, Burdukiewicz Michał, Iglesias Valentín, Kmiecik Sebastian, Ventura Salvador
89. Aggrescan4D: A comprehensive tool for pH-dependent analysis and engineering of protein aggregation propensityProtein Science, 33: e5180, 2024Zalewski Mateusz, Iglesias Valentin, Bárcenas Oriol, Ventura Salvador, Kmiecik Sebastian
90. Aggrescan4D: structure-informed analysis of pH-dependent protein aggregationNucleic Acids Research, : gkae382, 2024Bárcenas Oriol, Kuriata Aleksander, Zalewski Mateusz, Iglesias Valentín, Pintado-Grima Carlos, Firlik Grzegorz, Burdukiewicz Michał, Kmiecik Sebastian, Ventura Salvador
91. Antibacterial and anti-biofilm activities of new fluoroquinolone derivatives coupled with nitrogen-based heterocyclesBiomedicine & Pharmacotherapy, 179: 117439, 2024Piotr Roszkowski, Anna Bielenica, Joanna Stefańska, Anna Majewska, Kinga Markowska, Hanna Pituch, Michał Koliński, Kmiecik Sebastian, Alicja Chrzanowska, Marta Struga
92. Comparative analysis of RNA 3D structure prediction methods: towards enhanced modeling of RNA–ligand interactionsNucleic Acids Research, 52, 2024Chandran Nithin, Kmiecik Sebastian, Roman Błaszczyk, Julita Nowicka, Irina Tuszyńska
93. Delving into human α1,4-galactosyltransferase acceptor specificity: The role of enzyme dimerizationBiochemical And Biophysical Research Communications, 736: 150486, 2024Krzysztof Mikołajczyk, Wróblewski Karol, Kmiecik Sebastian
94. Efficient improvement of the proliferation, differentiation, and anti-arthritic capacity of mesenchymal stem cells by simply culturing on the immobilized FGF2 derived peptide, 44-ERGVVSIKGV-53Journal Of Advanced Research, 62: 119-141, 2024Soo Bin Lee, Ahmed Abdal Dayem, Kmiecik Sebastian, Kyung Min Lim, Dong Sik Seo, Hyeong-Taek Kim, Polash Kumar Biswas, Minjae Do, Deok-Ho Kim, Ssang-Goo Cho
95. Exploring protein functions from structural flexibility using CABS-flex modelingProtein Science, 33(9): :e509, 2024Chandran Nithin, Fornari Rocco, Pilla Smita, Wróblewski Karol, Zalewski Mateusz, Rafał Madaj, Andrzej Kolinski, Joanna M. Macnar, Kmiecik Sebastian
96. Structure prediction of linear and cyclic peptides using CABS-flexBriefings In Bioinformatics, 25: bbae003, 2024Badaczewska-Dawid Aleksandra, Wróblewski Karol, Kurciński Mateusz, Kmiecik Sebastian
97. The Synergistic Effect of N2 and N7 Modifications on the Inhibitory Efficacy of mRNA Cap AnaloguesPharmaceuticals, 17, 2024Kurpiejewski Karol, Piecyk Karolina, Lukaszewicz Maciej, Kamel Karol, Chmurski Kazimierz, Kmiecik Sebastian, Jankowska-Anyszka Marzena
98. A3DyDB: exploring structural aggregation propensities in the yeast proteomeMicrobial Cell Factories, 22: 186, 2023Javier Garcia-Pardo, Aleksandra E. Badaczewska-Dawid, Carlos Pintado-Grima, Valentin Iglesias, Kuriata Aleksander, Kmiecik Sebastian, Salvador Ventura
99. Fatty Acids Reverse the Supramolecular Chirality of Insulin FibrilsJ. Phys. Chem. Lett., 14, 30: 6935–6939, 2023Aidan P. Holman, Kimberly Quinn, Kumar Rakesh, Kmiecik Sebastian, Abid Ali, Dmitry Kurouski
100. Menthol- and thymol-based ciprofloxacin derivatives against Mycobacterium tuberculosis: in vitro activity, lipophilicity, and computational studiesScientific Reports, 13(1): 16328, 2023Daniel Szulczyk, Mateusz Woziński, Michał Koliński, Kmiecik Sebastian, Agnieszka Głogowska, Ewa Augustynowicz-Kopeć, Michał A Dobrowolski, Piotr Roszkowski, Marta Struga, Krzesimir Ciura
101. N-Acylated Ciprofloxacin Derivatives: Synthesis and In Vitro Biological Evaluation as Antibacterial and Anticancer AgentsAcs Omega, 8: 18663-18684, 2023Struga Marta, Roszkowski Piotr, Bielenica Anna, Otto-Ślusarczyk Dagmara, Stępień Karolina, Stefańska Joanna, Zabost Anna, Augustynowicz-Kopeć Ewa, Koliński Michał, Kmiecik Sebastian, Myslovska Alina, Wrzosek Małgorzata
102. A3D 2.0 Update for the Prediction and Optimization of Protein SolubilityMethods in Molecular Biology, 2406, 2022Jordi Pujols, Valentin Iglesias, Jaime Santos, Kuriata Aleksander, Kmiecik Sebastian, Salvador Ventura

...And 73 more - see all publications of this author