Mateusz Kurciński

Assistant Professor

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Publications

24. Structure prediction of linear and cyclic peptides using CABS-flexBriefings In Bioinformatics, 25: bbae003, 2024Badaczewska-Dawid Aleksandra, Wróblewski Karol, Kurciński Mateusz, Kmiecik Sebastian
25. MAPIYA contact map server for identification and visualization of molecular interactions in proteins and biological complexesNucleic Acids Research: gkac307, 2022Aleksandra E Badaczewska-Dawid, Chandran Nithin, Wróblewski Karol, Kurciński Mateusz, Kmiecik Sebastian
26. Protein-protein docking with large-scale backbone flexibility using coarse-grained Monte-Carlo simulationsInternational Journal of Molecular Sciences, 22(14): 7341, 2021Kurciński Mateusz, Kmiecik Sebastian, Zalewski Mateusz, Kolinski Andrzej
27. Flexible docking of peptides to proteins using CABS-dockProtein Science, 29: 211–222, 2020Kurciński Mateusz, Badaczewska-Dawid Aleksandra, Kolinski Michal, Kolinski Andrzej, Kmiecik Sebastian
28. Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubilityNucleic Acids Research, 47: W300-W307, 2019Kuriata Aleksander, Iglesias Valentin, Pujols Jordi, Kurciński Mateusz, Kmiecik Sebastian, Ventura Salvador
29. Aggrescan3D standalone package for structure-based prediction of protein aggregation propertiesBioinformatics, btz143, 2019Kuriata Aleksander, Iglesias V., Kurciński Mateusz, Ventura S., Kmiecik Sebastian
30. CABS-dock standalone: a toolbox for flexible protein-peptide dockingBioinformatics, btz185, 2019Kurciński Mateusz, Ciemny M. P., Oleniecki T., Kuriata Aleksander, Badaczewska-Dawid A. E., Kolinski A., Kmiecik Sebastian
31. Protein Structure Prediction Using Coarse-Grained ModelsComputational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes: 27-59, 2019Błaszczyk Maciej, Gront Dominik, Kmiecik Sebastian, Kurciński Mateusz, Kolinski Michal, Ciemny Maciej, Ziolkowska Katarzyna, Panek Marta, Kolinski Andrzej
32. CABS-flex 2.0: a web server for fast simulations of flexibility of protein structuresNucleic Acids Res, 46: W338-W343, 2018Kuriata Aleksander, Gierut A. M., Oleniecki T., Ciemny Maciej, Kolinski A., Kurciński Mateusz, Kmiecik Sebastian
33. CABS-flex standalone: a simulation environment for fast modeling of protein flexibilityBioinformatics, 4: 694–695, 2018Kurciński Mateusz, Oleniecki T., Ciemny Maciej, Kuriata Aleksander, Kolinski A., Kmiecik Sebastian
34. Protein-peptide docking using CABS-dock and contact informationBriefings in Bioinformatics, 2018Błaszczyk Maciej, Ciemny Maciej, Kolinski A., Kurciński Mateusz, Kmiecik Sebastian
35. Protein-peptide docking: opportunities and challengesDrug Discovery Today, 23: 1530-1537, 2018Ciemny Maciej, Kurciński Mateusz, Kamel Karol, Kolinski Andrzej, Alam Nawsad, Schueler-Furman Ora, Kmiecik Sebastian
36. A protocol for CABS-dock protein-peptide docking driven by side-chain contact informationBiomedical Engineering Online, 16, 2017Kurciński Mateusz, Błaszczyk Maciej, Kolinski Andrzej, Kmiecik Sebastian, Ciemny Maciej
37. Highly Flexible Protein-Peptide Docking Using CABS-DockMethods in Molecular Biology, 1561: 69-94, 2017Ciemny Maciej, Kurciński Mateusz, Konrad Kozak, Andrzej Kolinski, Kmiecik Sebastian
38. Modeling EphB4-EphrinB2 protein-protein interaction using flexible docking of a short linear motifBiomedical Engineering Online, 16, 2017Kurciński Mateusz, Błaszczyk Maciej, Kolinski Andrzej, Kmiecik Sebastian, Ciemny Maciej

...And 9 more - see all publications of this author