Maciej Błaszczyk

Postdoc

Contact

Publications

13. Protein Structure Prediction Using Coarse-Grained ModelsComputational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes: 27-59, 2019Błaszczyk Maciej, Gront Dominik, Kmiecik Sebastian, Kurciński Mateusz, Kolinski Michal, Ciemny Maciej, Ziolkowska Katarzyna, Panek Marta, Kolinski Andrzej
14. Protein-peptide docking using CABS-dock and contact informationBriefings in Bioinformatics, 2018Błaszczyk Maciej, Ciemny Maciej, Kolinski A., Kurciński Mateusz, Kmiecik Sebastian
15. A protocol for CABS-dock protein-peptide docking driven by side-chain contact informationBiomedical Engineering Online, 16, 2017Kurciński Mateusz, Błaszczyk Maciej, Kolinski Andrzej, Kmiecik Sebastian, Ciemny Maciej
16. Modeling EphB4-EphrinB2 protein-protein interaction using flexible docking of a short linear motifBiomedical Engineering Online, 16, 2017Kurciński Mateusz, Błaszczyk Maciej, Kolinski Andrzej, Kmiecik Sebastian, Ciemny Maciej
17. Flexible protein-peptide docking using CABS-dock with knowledge about the binding siteProceedings Of The International Work-conference On Bioinformatics And Biomedical Engineering (iwwbio) In Granada, Spain, 195-201, Arxiv:1605.09269, 2016Kurciński Mateusz, Ciemny Maciej, Błaszczyk Maciej, Andrzej Koliński, Kmiecik Sebastian
18. Modeling of protein-peptide interactions using the CABS-dock web server for binding site search and flexible dockingMethods, 93: 72-83, 2016Błaszczyk Maciej, Kurciński Mateusz, Kouza Maksim, Wieteska Lukasz, Debinski Aleksander, Kolinski Andrzej, Kmiecik Sebastian
19. CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding siteNucleic Acids Research, 43: W419-W424, 2015Kurciński Mateusz, Michal Jamroz, Błaszczyk Maciej, Andrzej Koliński, Kmiecik Sebastian
20. Coarse-grained modeling of protein structure, dynamics and protein-protein interactionsTask Quarterly, 18: 219–229, 2014Kolinski Andrzej, Kmiecik Sebastian, Jamroz Michal, Błaszczyk Maciej, Kouza Maksim, Kurciński Mateusz
21. Coarse-grained protein models in structure predictionComputational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes, 1: 25-53, 2014Błaszczyk Maciej, Gront Dominik, Kmiecik Sebastian, Ziolkowska Katarzyna, Panek Marta, Kolinski Andrzej
22. CABS-fold: server for the de novo and consensus-based prediction of protein structureNucleic Acids Research, 41: W406-W411, 2013Błaszczyk Maciej, Jamroz Michal, Kmiecik Sebastian, Kolinski Andrzej
23. Coarse-grained Protein Modeling: Dynamics, Folding Pathways and Mechanical UnfoldingFrom Computational Biophysics To Systems Biology Proceedings, 8: 83-90, 2012Kolinski Andrzej, Błaszczyk Maciej, Kmiecik Sebastian
24. Optimization of protein modelsWiley Interdisciplinary Reviews-computational Molecular Science, 2: 479-493, 2012Gront Dominik, Kmiecik Sebastian, Błaszczyk Maciej, Ekonomiuk Dariusz, Kolinski Andrzej
25. Prediction of Experimental Phi Values in Protein Folding by Simulation with Knowledge-based Potentials: B Domain of Protein AFrom Computational Biophysics to Systems Biology Proceedings, 8: 79-82, 2012Kmiecik Sebastian, Błaszczyk Maciej, Kolinski Andrzej