Aleksander Kuriata

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Publications

11. A3D Model Organism Database (A3D-MODB): a database for proteome aggregation predictions in model organismsNucleic Acids Research, 52: D360-D367, 2024Badaczewska-Dawid Aleksandra E, Kuriata Aleksander, Pintado-Grima Carlos, Garcia-Pardo Javier, Burdukiewicz Michał, Iglesias Valentín, Kmiecik Sebastian, Ventura Salvador
12. A3DyDB: exploring structural aggregation propensities in the yeast proteomeMicrobial Cell Factories, 22: 186, 2023Javier Garcia-Pardo, Aleksandra E. Badaczewska-Dawid, Carlos Pintado-Grima, Valentin Iglesias, Kuriata Aleksander, Kmiecik Sebastian, Salvador Ventura
13. A3D 2.0 Update for the Prediction and Optimization of Protein SolubilityMethods in Molecular Biology, 2406, 2022Jordi Pujols, Valentin Iglesias, Jaime Santos, Kuriata Aleksander, Kmiecik Sebastian, Salvador Ventura
14. A3D database: structure-based predictions of protein aggregation for the human proteomeBioinformatics, 38: 3121-3123, 2022Badaczewska-Dawid Aleksandra E, Garcia-Pardo Javier, Kuriata Aleksander, Pujols Jordi, Ventura Salvador, Kmiecik Sebastian
15. Protocols for Rational Design of Protein Solubility and Aggregation Properties Using Aggrescan3D StandaloneMethods in Molecular Biology, 2340: 17-40, 2022Kuriata Aleksander, Aleksandra Badaczewska-Dawid, Jordi Pujols, Salvador Ventura, Kmiecik Sebastian
16. Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubilityNucleic Acids Research, 47: W300-W307, 2019Kuriata Aleksander, Iglesias Valentin, Pujols Jordi, Kurciński Mateusz, Kmiecik Sebastian, Ventura Salvador
17. Aggrescan3D standalone package for structure-based prediction of protein aggregation propertiesBioinformatics, btz143, 2019Kuriata Aleksander, Iglesias V., Kurciński Mateusz, Ventura S., Kmiecik Sebastian
18. CABS-dock standalone: a toolbox for flexible protein-peptide dockingBioinformatics, btz185, 2019Kurciński Mateusz, Ciemny M. P., Oleniecki T., Kuriata Aleksander, Badaczewska-Dawid A. E., Kolinski A., Kmiecik Sebastian
19. CABS-flex 2.0: a web server for fast simulations of flexibility of protein structuresNucleic Acids Res, 46: W338-W343, 2018Kuriata Aleksander, Gierut A. M., Oleniecki T., Ciemny Maciej, Kolinski A., Kurciński Mateusz, Kmiecik Sebastian
20. CABS-flex standalone: a simulation environment for fast modeling of protein flexibilityBioinformatics, 4: 694–695, 2018Kurciński Mateusz, Oleniecki T., Ciemny Maciej, Kuriata Aleksander, Kolinski A., Kmiecik Sebastian
21. Combining Structural Aggregation Propensity and Stability Predictions To Redesign Protein SolubilityMolecular Pharmaceutics, 15: 3846-3859, 2018Gil-Garcia Marcos, Bano-Polo Manuel, Varejao Nathalia, Jarnroz Michal, Kuriata Aleksander, Diaz-Caballero Marta, Lascorz Jara, More Bertrand, Navarro Susanna, Reverter David, Kmiecik Sebastian, Ventura Salvador