Sebastian Kmiecik photo

Sebastian Kmiecik

Head of the Laboratory

Employment:

2017 - today - Biological and Chemical Research Centre, University of Warsaw, Warsaw - Head of Laboratory of Computational Biology
2010 - today - Faculty of Chemistry, University of Warsaw, Warsaw - Associate Professor
2007 - 2010 - Selvita company, Krakow - Partner/ Head of Computational Chemistry; Project Manager

Citations according to Google scholar


Contact

Emailsekmi@chem.uw.edu.pl
Phone(+48) 22 55 26 364Dial the number
AddressRoom 3.132
Biological and Chemical Research Centre
University of Warsaw
Zwirki i Wigury 101
02-089 Warsaw, Poland
rooms 3.132, 3.133

Publications

  1. Aggrescan3D standalone package for structure-based prediction of protein aggregation propertiesBioinformatics, btz143, 2019Kuriata Aleksander, Iglesias V., Kurciński Mateusz, Ventura S., Kmiecik Sebastian
  2. CABS-dock standalone: a toolbox for flexible protein-peptide dockingBioinformatics, btz185, 2019Kurciński Mateusz, Ciemny M. P., Oleniecki T., Kuriata Aleksander, Badaczewska-Dawid A. E., Kolinski A., Kmiecik Sebastian
  3. Flexible docking of peptides to proteins using CABS-dockProtein Science, 10.1002/pro.3771, 2019Kurciński Mateusz, Badaczewska-Dawid Aleksandra, Kolinski Michal, Kolinski Andrzej, Kmiecik Sebastian
  4. Modeling of Disordered Protein Structures Using Monte Carlo Simulations and Knowledge-Based Statistical Force FieldsInternational Journal of Molecular Sciences, 20: 606, 2019Ciemny Maciej, Badaczewska-Dawid A. E., Pikuzinska M., Kolinski A., Kmiecik Sebastian
  5. Protein Dynamics Simulations Using Coarse-Grained ModelsComputational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes: 61-87, 2019Kmiecik Sebastian, Wabik Jacek, Kolinski Michal, Kouza Maksim, Kolinski Andrzej
  6. Protein Structure Prediction Using Coarse-Grained ModelsComputational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes: 27-59, 2019Błaszczyk Maciej, Gront Dominik, Kmiecik Sebastian, Kurciński Mateusz, Kolinski Michal, Ciemny Maciej, Ziolkowska Katarzyna, Panek Marta, Kolinski Andrzej
  7. Protocols for all-atom reconstruction and high-resolution refinement of protein-peptide complex structuresMethods in Molecular Biology, submitted, 2019Badaczewska-Dawid Aleksandra, Khramushin Alisa, Kolinski Andrzej, Schueler-Furman Ora, Kmiecik Sebastian
  8. Protocols for fast simulations of protein structure flexibility using CABS-flex and SURPASSMethods in Molecular Biology, submitted, 2019Badaczewska-Dawid Aleksandra, Kolinski Andrzej, Kmiecik Sebastian
  9. CABS-flex 2.0: a web server for fast simulations of flexibility of protein structuresNucleic Acids Res, 46: W338-W343, 2018Kuriata Aleksander, Gierut A. M., Oleniecki T., Ciemny Maciej, Kolinski A., Kurciński Mateusz, Kmiecik Sebastian
  10. CABS-flex standalone: a simulation environment for fast modeling of protein flexibilityBioinformatics, 4: 694–695, 2018Kurciński Mateusz, Oleniecki T., Ciemny Maciej, Kuriata Aleksander, Kolinski A., Kmiecik Sebastian
  11. Combining Structural Aggregation Propensity and Stability Predictions To Redesign Protein SolubilityMolecular Pharmaceutics, 15: 3846-3859, 2018Gil-Garcia Marcos, Bano-Polo Manuel, Varejao Nathalia, Jarnroz Michal, Kuriata Aleksander, Diaz-Caballero Marta, Lascorz Jara, More Bertrand, Navarro Susanna, Reverter David, Kmiecik Sebastian, Ventura Salvador
  12. Design and synthesis of novel 1H-tetrazol-5-amine based potent antimicrobial agents: DNA topoisomerase IV and gyrase affinity evaluation supported by molecular docking studiesEuropean Journal Of Medicinal Chemistry, 156: 631-640, 2018Szulczyk Daniel, Dobrowolski Michal A., Roszkowski Piotr, Bielenica Anna, Stefanska Joanna, Kolinski Michal, Kmiecik Sebastian, Jozwiak Michal, Wrzosek Malgorzata, Olejarz Wioletta, Struga Marta
  13. Kinetics and mechanical stability of the fibril state control fibril formation time of polypeptide chains: A computational studyJournal Of Chemical Physics, 148, 2018Kouza Maksim, Nguyen Truong Co, Li Mai Suan, Kmiecik Sebastian, Kolinski Andrzej, Kloczkowski Andrzej, Buhimschi Irina Alexandra
  14. Modeling of Protein Structural Flexibility and Large-Scale Dynamics: Coarse-Grained Simulations and Elastic Network ModelsInternational Journal Of Molecular Sciences, 19, 2018Kmiecik Sebastian, Kouza Maksim, Badaczewska-Dawid Aleksandra E., Kloczkowski Andrzej, Kolinski Andrzej
  15. Protein-peptide docking using CABS-dock and contact informationBriefings in Bioinformatics, 2018Błaszczyk Maciej, Ciemny Maciej, Kolinski A., Kurciński Mateusz, Kmiecik Sebastian

  16. ...And 43 more - see all publications of this author