Sebastian Kmiecik photo

Sebastian Kmiecik

Head of the Laboratory

Employment:

2017 - today - Biological and Chemical Research Centre, University of Warsaw, Warsaw - Head of Laboratory of Computational Biology
2010 - today - Faculty of Chemistry, University of Warsaw, Warsaw - Associate Professor
2007 - 2010 - Selvita company, Krakow - Partner/ Head of Computational Chemistry; Project Manager


Contact

Emailsekmi@chem.uw.edu.pl
Phone(+48) 22 55 26 364
Room3.132

Publications

  1. CABS-flex 2.0: a web server for fast simulations of flexibility of protein structuresNucleic Acids Research, 46: W338-W343, 2018
  2. Combining Structural Aggregation Propensity and Stability Predictions To Redesign Protein SolubilityMolecular Pharmaceutics, 15: 3846-3859, 2018
  3. Design and synthesis of novel 1H-tetrazol-5-amine based potent antimicrobial agents: DNA topoisomerase IV and gyrase affinity evaluation supported by molecular docking studiesEuropean Journal Of Medicinal Chemistry, 156: 631-640, 2018
  4. Kinetics and mechanical stability of the fibril state control fibril formation time of polypeptide chains: A computational studyJournal Of Chemical Physics, 148, 2018
  5. Modeling of Protein Structural Flexibility and Large-Scale Dynamics: Coarse-Grained Simulations and Elastic Network ModelsInternational Journal Of Molecular Sciences, 19, 2018
  6. Protein-peptide docking: opportunities and challengesDrug Discovery Today, 23: 1530-1537, 2018
  7. Synthesis, structural and antimicrobial studies of type II topoisomerase-targeted copper(II) complexes of 1,3-disubstituted thiourea ligandsJournal Of Inorganic Biochemistry, 182: 61-70, 2018
  8. A protocol for CABS-dock protein-peptide docking driven by side-chain contact informationBiomedical Engineering Online, 16, 2017
  9. Highly Flexible Protein-Peptide Docking Using CABS-DockMODELING PEPTIDE-PROTEIN INTERACTIONS: METHODS AND PROTOCOLS, 1561: 69-94, 2017
  10. Modeling EphB4-EphrinB2 protein-protein interaction using flexible docking of a short linear motifBiomedical Engineering Online, 16, 2017
  11. One-Dimensional Structural Properties of Proteins in the Coarse-Grained CABS ModelPREDICTION OF PROTEIN SECONDARY STRUCTURE, 1484: 83-113, 2017
  12. 5-HT2 receptor affinity, docking studies and pharmacological evaluation of a series of 1,3-disubstituted thiourea derivativesEuropean Journal Of Medicinal Chemistry, 116: 173-186, 2016
  13. Coarse-Grained Protein Models and Their ApplicationsChemical Reviews, 116: 7898-7936, 2016
  14. Coarse-Grained Simulations of Membrane Insertion and Folding of Small Helical Proteins Using the CABS ModelJournal Of Chemical Information And Modeling, 56: 2207-2215, 2016
  15. Modeling of protein-peptide interactions using the CABS-dock web server for binding site search and flexible dockingMethods, 93: 72-83, 2016

  16. ...And 20 more - see all publications of this author