Sebastian Kmiecik photo

Sebastian Kmiecik

Head of the Laboratory

Employment:

2017 - today - Biological and Chemical Research Centre, University of Warsaw, Warsaw - Head of Laboratory of Computational Biology
2010 - today - Faculty of Chemistry, University of Warsaw, Warsaw - Associate Professor
2007 - 2010 - Selvita company, Krakow - Partner/ Head of Computational Chemistry; Project Manager

Citations according to Google scholar


Contact

Emailsekmi@chem.uw.edu.pl
Phone(+48) 22 55 26 364Dial the number
AddressRoom 3.132
Biological and Chemical Research Centre
University of Warsaw
Zwirki i Wigury 101
02-089 Warsaw, Poland
rooms 3.132, 3.133

Publications

  1. Computational reconstruction of atomistic protein structures from coarse-grained modelsComputational and Structural Biotechnology Journal, 18: 162-176, 2020Badaczewska-Dawid Aleksandra, Kolinski Andrzej, Kmiecik Sebastian
  2. Docking interactions determine early cleavage events in insulin proteolysis by pepsin: experiment and simulationInternational Journal of Biological Macromolecules, 2020Kolinski Michal, Kmiecik Sebastian, Dec Robert, Piejko Marcin, Mak Pawel, Dzwolak Wojciech
  3. Flexible docking of peptides to proteins using CABS-dockProtein Science, 29: 211–222, 2020Kurciński Mateusz, Badaczewska-Dawid Aleksandra, Kolinski Michal, Kolinski Andrzej, Kmiecik Sebastian
  4. Isoxazole-containing 5′ mRNA cap analogues as inhibitors of the translation initiation processBioorganic Chemistry, 96: 103583, 2020Piecyk Karolina, Lukaszewicz Maciej, Kamel Karol, Janowska Maria, Pietrow Paulina, Kmiecik Sebastian, Jankowska-Anyszka Marzena
  5. Protocols for all-atom reconstruction and high-resolution refinement of protein-peptide complex structuresMethods in Molecular Biology, in press, 2020Badaczewska-Dawid Aleksandra, Khramushin Alisa, Kolinski Andrzej, Schueler-Furman Ora, Kmiecik Sebastian
  6. Protocols for fast simulations of protein structure flexibility using CABS-flex and SURPASSMethods in Molecular Biology, in press, 2020Badaczewska-Dawid Aleksandra, Kolinski Andrzej, Kmiecik Sebastian
  7. Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubilityNucleic Acids Research, 47: W300-W307, 2019Kuriata Aleksander, Iglesias Valentin, Pujols Jordi, Kurciński Mateusz, Kmiecik Sebastian, Ventura Salvador
  8. Aggrescan3D standalone package for structure-based prediction of protein aggregation propertiesBioinformatics, btz143, 2019Kuriata Aleksander, Iglesias V., Kurciński Mateusz, Ventura S., Kmiecik Sebastian
  9. CABS-dock standalone: a toolbox for flexible protein-peptide dockingBioinformatics, btz185, 2019Kurciński Mateusz, Ciemny M. P., Oleniecki T., Kuriata Aleksander, Badaczewska-Dawid A. E., Kolinski A., Kmiecik Sebastian
  10. Modeling of Disordered Protein Structures Using Monte Carlo Simulations and Knowledge-Based Statistical Force FieldsInternational Journal of Molecular Sciences, 20: 606, 2019Ciemny Maciej, Badaczewska-Dawid A. E., Pikuzinska M., Kolinski A., Kmiecik Sebastian
  11. Protein Dynamics Simulations Using Coarse-Grained ModelsComputational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes: 61-87, 2019Kmiecik Sebastian, Wabik Jacek, Kolinski Michal, Kouza Maksim, Kolinski Andrzej
  12. Protein Structure Prediction Using Coarse-Grained ModelsComputational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes: 27-59, 2019Błaszczyk Maciej, Gront Dominik, Kmiecik Sebastian, Kurciński Mateusz, Kolinski Michal, Ciemny Maciej, Ziolkowska Katarzyna, Panek Marta, Kolinski Andrzej
  13. CABS-flex 2.0: a web server for fast simulations of flexibility of protein structuresNucleic Acids Res, 46: W338-W343, 2018Kuriata Aleksander, Gierut A. M., Oleniecki T., Ciemny Maciej, Kolinski A., Kurciński Mateusz, Kmiecik Sebastian
  14. CABS-flex standalone: a simulation environment for fast modeling of protein flexibilityBioinformatics, 4: 694–695, 2018Kurciński Mateusz, Oleniecki T., Ciemny Maciej, Kuriata Aleksander, Kolinski A., Kmiecik Sebastian
  15. Combining Structural Aggregation Propensity and Stability Predictions To Redesign Protein SolubilityMolecular Pharmaceutics, 15: 3846-3859, 2018Gil-Garcia Marcos, Bano-Polo Manuel, Varejao Nathalia, Jarnroz Michal, Kuriata Aleksander, Diaz-Caballero Marta, Lascorz Jara, More Bertrand, Navarro Susanna, Reverter David, Kmiecik Sebastian, Ventura Salvador

  16. ...And 47 more - see all publications of this author