Sebastian Kmiecik photo

Sebastian Kmiecik

Head of the Laboratory

Employment:

2017 - today - Biological and Chemical Research Centre, University of Warsaw, Warsaw - Head of Laboratory of Computational Biology
2010 - today - Faculty of Chemistry, University of Warsaw, Warsaw - Associate Professor
2007 - 2010 - Selvita company, Krakow - Partner/ Head of Computational Chemistry; Project Manager

Citations according to Google scholar


Contact

Emailsekmi@chem.uw.edu.pl
Phone(+48) 22 55 26 364Dial the number
AddressRoom 3.132
Biological and Chemical Research Centre
University of Warsaw
Zwirki i Wigury 101
02-089 Warsaw, Poland
rooms 3.132, 3.133

Publications

  1. Modeling of Disordered Protein Structures Using Monte Carlo Simulations and Knowledge-Based Statistical Force FieldsInternational Journal of Molecular Sciences, 20: 606, 2019Ciemny Maciej, Badaczewska-Dawid A. E., Pikuzinska M., Kolinski A., Kmiecik Sebastian
  2. Protein Dynamics Simulations Using Coarse-Grained ModelsComputational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes: 61-87, 2019Kmiecik Sebastian, Wabik Jacek, Kolinski Michal, Kouza Maksim, Kolinski Andrzej
  3. Protein Structure Prediction Using Coarse-Grained ModelsComputational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes: 27-59, 2019Błaszczyk Maciej, Gront Dominik, Kmiecik Sebastian, Kurciński Mateusz, Kolinski Michal, Ciemny Maciej, Ziolkowska Katarzyna, Panek Marta, Kolinski Andrzej
  4. CABS-flex 2.0: a web server for fast simulations of flexibility of protein structuresNucleic Acids Res, 46: W338-W343, 2018Kuriata Aleksander, Gierut A. M., Oleniecki T., Ciemny Maciej, Kolinski A., Kurciński Mateusz, Kmiecik Sebastian
  5. CABS-flex standalone: a simulation environment for fast modeling of protein flexibilityBioinformatics, 4: 694–695, 2018Kurciński Mateusz, Oleniecki T., Ciemny Maciej, Kuriata Aleksander, Kolinski A., Kmiecik Sebastian
  6. Combining Structural Aggregation Propensity and Stability Predictions To Redesign Protein SolubilityMolecular Pharmaceutics, 15: 3846-3859, 2018Gil-Garcia Marcos, Bano-Polo Manuel, Varejao Nathalia, Jarnroz Michal, Kuriata Aleksander, Diaz-Caballero Marta, Lascorz Jara, More Bertrand, Navarro Susanna, Reverter David, Kmiecik Sebastian, Ventura Salvador
  7. Design and synthesis of novel 1H-tetrazol-5-amine based potent antimicrobial agents: DNA topoisomerase IV and gyrase affinity evaluation supported by molecular docking studiesEuropean Journal Of Medicinal Chemistry, 156: 631-640, 2018Szulczyk Daniel, Dobrowolski Michal A., Roszkowski Piotr, Bielenica Anna, Stefanska Joanna, Kolinski Michal, Kmiecik Sebastian, Jozwiak Michal, Wrzosek Malgorzata, Olejarz Wioletta, Struga Marta
  8. Kinetics and mechanical stability of the fibril state control fibril formation time of polypeptide chains: A computational studyJournal Of Chemical Physics, 148, 2018Kouza Maksim, Nguyen Truong Co, Li Mai Suan, Kmiecik Sebastian, Kolinski Andrzej, Kloczkowski Andrzej, Buhimschi Irina Alexandra
  9. Modeling of Protein Structural Flexibility and Large-Scale Dynamics: Coarse-Grained Simulations and Elastic Network ModelsInternational Journal Of Molecular Sciences, 19, 2018Kmiecik Sebastian, Kouza Maksim, Badaczewska-Dawid Aleksandra E., Kloczkowski Andrzej, Kolinski Andrzej
  10. Protein-peptide docking using CABS-dock and contact informationBriefings in Bioinformatics, 2018Błaszczyk Maciej, Ciemny Maciej, Kolinski A., Kurciński Mateusz, Kmiecik Sebastian
  11. Protein-peptide docking: opportunities and challengesDrug Discovery Today, 23: 1530-1537, 2018Ciemny Maciej, Kurciński Mateusz, Kamel Karol, Kolinski Andrzej, Alam Nawsad, Schueler-Furman Ora, Kmiecik Sebastian
  12. Synthesis, structural and antimicrobial studies of type II topoisomerase-targeted copper(II) complexes of 1,3-disubstituted thiourea ligandsJournal Of Inorganic Biochemistry, 182: 61-70, 2018Bielenica Anna, Drzewiecka-Antonik Aleksandra, Rejmak Pawel, Stefanska Joanna, Kolinski Michal, Kmiecik Sebastian, Lesyng Bogdan, Wlodarczyk Marta, Pietrzyk Piotr, Struga Marta
  13. A protocol for CABS-dock protein-peptide docking driven by side-chain contact informationBiomedical Engineering Online, 16, 2017Kurciński Mateusz, Błaszczyk Maciej, Kolinski Andrzej, Kmiecik Sebastian, Ciemny Maciej
  14. Highly Flexible Protein-Peptide Docking Using CABS-DockMethods in Molecular Biology, 1561: 69-94, 2017Ciemny Maciej, Kurciński Mateusz, Konrad Kozak, Andrzej Kolinski, Kmiecik Sebastian
  15. Modeling EphB4-EphrinB2 protein-protein interaction using flexible docking of a short linear motifBiomedical Engineering Online, 16, 2017Kurciński Mateusz, Błaszczyk Maciej, Kolinski Andrzej, Kmiecik Sebastian, Ciemny Maciej

  16. ...And 38 more - see all publications of this author