Mateusz Zalewski

PhD candidate

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Publications

7. Protein–Peptide Docking with ESMFold Language ModelJournal of Chemical Theory and Computation, 2025Zalewski Mateusz, Bjorn Wallner, Kmiecik Sebastian
8. Aggrescan4D: A comprehensive tool for pH-dependent analysis and engineering of protein aggregation propensityProtein Science, 33: e5180, 2024Zalewski Mateusz, Iglesias Valentin, Bárcenas Oriol, Ventura Salvador, Kmiecik Sebastian
9. Aggrescan4D: structure-informed analysis of pH-dependent protein aggregationNucleic Acids Research, : gkae382, 2024Bárcenas Oriol, Kuriata Aleksander, Zalewski Mateusz, Iglesias Valentín, Pintado-Grima Carlos, Firlik Grzegorz, Burdukiewicz Michał, Kmiecik Sebastian, Ventura Salvador
10. Exploring protein functions from structural flexibility using CABS-flex modelingProtein Science, 33(9): :e509, 2024Chandran Nithin, Fornari Rocco, Pilla Smita, Wróblewski Karol, Zalewski Mateusz, Rafał Madaj, Andrzej Kolinski, Joanna M. Macnar, Kmiecik Sebastian
11. Phosphorylation of P-stalk proteins defines the ribosomal state for interaction with auxiliary protein factorsEmbo Reports, 25: 5478-5506, 2024Filipek Kamil, Blanchet Sandra, Molestak Eliza, Zaciura Monika, Wu Colin Chih-Chien, Patrycja Horbowicz-Drożdżal, Przemysław Grela, Zalewski Mateusz, Kmiecik Sebastian, Alan González-Ibarra, Dawid Krokowski, Przemysław Latoch, Agata L Starosta, Mateusz Mołoń, Yutian Shao, Lidia Borkiewicz, Barbara Michalec-Wawiórka, Leszek Wawiórka, Konrad Kubiński, Katarzyna Socała, Piotr Wlaź, Kyle W Cunningham, Rachel Green , Marina V Rodnina, Marek Tchórzewski
12. Molecular Dynamics Scoring of Protein–Peptide Models Derived from Coarse-Grained DockingMolecules, 26(11): 3293, 2021Zalewski Mateusz, Kmiecik Sebastian, Koliński Michał
13. Protein-protein docking with large-scale backbone flexibility using coarse-grained Monte-Carlo simulationsInternational Journal of Molecular Sciences, 22(14): 7341, 2021Kurciński Mateusz, Kmiecik Sebastian, Zalewski Mateusz, Kolinski Andrzej