Nithin Chandran photo

Nithin Chandran

Assistant Professor

2021 -  today - Assistant Professor,  Laboratory of Computational Biology, Biological and Chemical Research Centre, Faculty of ChemistryUniversity of Warsaw
2018 - 2021 - Postdoctoral Researcher, Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw
2017 - 2018 - Research Associate, Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw
2012 - 2017 - Research Scholar, Computational Structural Biology Lab, Department of Biotechnology, Indian Institute of Technology Kharagpur

Google Scholar citations, ORCID

Contact

Emailn.chandran@chem.uw.edu.pl
Phone+48 22 55 26 364Dial the number
AddressRoom 3.132
Biological and Chemical Research Centre
University of Warsaw
Zwirki i Wigury 101
02-089 Warsaw, Poland
rooms 3.132, 3.133

Publications

  1. Advanced computational tools for quantitative analysis of protein–nucleic acid interfaces In Advances in Protein Molecular and Structural Biology Methods : 163--180, 2022Sunandan Mukherjee, Chandran Nithin
  2. MAPIYA contact map server for identification and visualization of molecular interactions in proteins and biological complexesNucleic Acids Research: gkac307, 2022Aleksandra E Badaczewska-Dawid, Chandran Nithin, Wróblewski Karol, Kurciński Mateusz, Kmiecik Sebastian
  3. Molecular insights into RNA recognition and gene regulation by the TRIM-NHL protein Mei-P26Life Science Alliance, 5 (8) : e202201418, 2022Anna Salerno-Kochan, Andreas Horn, Pritha Ghosh, Chandran Nithin, Anna Kościelniak, Andreas Meindl, Daniela Strauss, Rościsław Krutyhołowa, Oliver Rossbach, Janusz M Bujnicki, Monika Gaik , Jan Medenbach, Sebastian Glatt
  4. Structure prediction of the druggable fragments in SARS-CoV-2 untranslated regionsInt. J. Mol. Sci., 23: 9630, 2022Julita Gumna, Maciej Antczak, Ryszard W. Adamiak, Janusz M. Bujnicki, Shi-Jie Chen, Feng Ding, Pritha Ghosh, Jun Li, Sunandan Mukherjee, Chandran Nithin, Katarzyna Pachulska-Wieczorek, Almudena Ponce-Salvatierra, Mariusz Popenda, Joanna Sarzynska, Tomasz Wirecki, Dong Zhang, Sicheng Zhang, Tomasz Zok, Eric Westhof, Marta Szachniuk, Zhichao Miao, Agnieszka Rybarczyk
  5. Computational Modeling Methods for 3D Structure Prediction of RibozymesRibozymes: 861-881, 2021Ghosh Pritha, Chandran Nithin, Joshi Astha, Stefaniak Filip, Wirecki Tomasz K., Bujnicki Janusz M.
  6. Constrained peptides mimic a viral suppressor of RNA silencingNucleic Acids Research, 2021Arne Kuepper, Niall McLoughlin, Saskia Neubacher, Alejandro Yeste-Vázquez, Estel Collado Camps, Chandran Nithin, Sunandan Mukherjee, Lucas Bethge, Janusz M Bujnicki, Roland Brock, Stefan Heinrichs, Tom N Grossmann
  7. NCodR: A multi-class SVM classification to distinguish between non-coding RNAs in ViridiplantaebioRxiv, 2021Chandran Nithin, Sunandan Mukherjee, Jolly Basak, Ranjit Prasad Bahadur
  8. RNA and DNA G-quadruplexes bind to human Dicer and inhibit its activityCellular and Molecular Life Sciences, 2021Natalia Koralewska, Agnieszka Szczepanska, Kinga Ciechanowska, Marta Wojnicka, Maria Pokornowska, Marek C Milewski, Dorota Gudanis, Daniel Baranowski, Chandran Nithin, Janusz M Bujnicki, Zofia Gdaniec, Marek Figlerowicz, Anna Kurzynska-Kokorniak
  9. Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elementsNucleic Acids Research, 48: 12436–12452, 2020Ilaria Manfredonia, Chandran Nithin, Almudena Ponce-Salvatierra, Pritha Ghosh, Tomasz K Wirecki, Tycho Marinus, Natacha S Ogando, Eric J Snijder, Martijn J van Hemert, Janusz M Bujnicki, Danny Incarnato
  10. Modeling of Three-Dimensional RNA Structures Using SimRNAProtein Structure Prediction (Part of the Methods in Molecular Biology book series), 2165: 103-125, 2020Tomasz K Wirecki, Chandran Nithin, Sunandan Mukherjee, Janusz M Bujnicki, Michał J Boniecki
  11. A structure-based model for the prediction of protein-RNA binding affinityRNA, 25: 1628-1645, 2019Chandran Nithin, Sunandan Mukherjee, Ranjit Prasad Bahadur
  12. Computational modeling of RNA 3D structure based on experimental dataBioscience Reports, 39(2): BSR20180430, 2019Almudena Ponce-Salvatierra, Astha, Katarzyna Merdas, Chandran Nithin, Pritha Ghosh, Sunandan Mukherjee, Janusz M Bujnicki
  13. Dissecting water binding sites at protein–protein interfaces: a lesson from the atomic structures in the Protein Data BankJournal of Biomolecular Structure And Dynamics, 37: 1204--1219, 2019Sunandan Mukherjee, Chandran Nithin, Yasaswi Divakaruni, Ranjit Prasad Bahadur
  14. QRNAS: software tool for refinement of nucleic acid structuresBmc Structural Biology, 19: 1-11, 2019Juliusz Stasiewicz, Sunandan Mukherjee, Chandran Nithin, Janusz M Bujnicki
  15. Bioinformatics tools and benchmarks for computational docking and 3D structure prediction of RNA-protein complexesGenes, 9: 432, 2018Chandran Nithin, Pritha Ghosh, Janusz M Bujnicki

  16. ...And 8 more - see all publications of this author