Aleksander Kuriata

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Publications

12. A3D Model Organism Database (A3D-MODB): a database for proteome aggregation predictions in model organismsNucleic Acids Research, 52: D360-D367, 2024Badaczewska-Dawid Aleksandra E, Kuriata Aleksander, Pintado-Grima Carlos, Garcia-Pardo Javier, Burdukiewicz Michał, Iglesias Valentín, Kmiecik Sebastian, Ventura Salvador
13. Aggrescan4D: structure-informed analysis of pH-dependent protein aggregationNucleic Acids Research, : gkae382, 2024Bárcenas Oriol, Kuriata Aleksander, Zalewski Mateusz, Iglesias Valentín, Pintado-Grima Carlos, Firlik Grzegorz, Burdukiewicz Michał, Kmiecik Sebastian, Ventura Salvador
14. A3DyDB: exploring structural aggregation propensities in the yeast proteomeMicrobial Cell Factories, 22: 186, 2023Javier Garcia-Pardo, Aleksandra E. Badaczewska-Dawid, Carlos Pintado-Grima, Valentin Iglesias, Kuriata Aleksander, Kmiecik Sebastian, Salvador Ventura
15. A3D 2.0 Update for the Prediction and Optimization of Protein SolubilityMethods in Molecular Biology, 2406, 2022Jordi Pujols, Valentin Iglesias, Jaime Santos, Kuriata Aleksander, Kmiecik Sebastian, Salvador Ventura
16. A3D database: structure-based predictions of protein aggregation for the human proteomeBioinformatics, 38: 3121-3123, 2022Badaczewska-Dawid Aleksandra E, Garcia-Pardo Javier, Kuriata Aleksander, Pujols Jordi, Ventura Salvador, Kmiecik Sebastian
17. Protocols for Rational Design of Protein Solubility and Aggregation Properties Using Aggrescan3D StandaloneMethods in Molecular Biology, 2340: 17-40, 2022Kuriata Aleksander, Aleksandra Badaczewska-Dawid, Jordi Pujols, Salvador Ventura, Kmiecik Sebastian
18. Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubilityNucleic Acids Research, 47: W300-W307, 2019Kuriata Aleksander, Iglesias Valentin, Pujols Jordi, Kurciński Mateusz, Kmiecik Sebastian, Ventura Salvador
19. Aggrescan3D standalone package for structure-based prediction of protein aggregation propertiesBioinformatics, btz143, 2019Kuriata Aleksander, Iglesias V., Kurciński Mateusz, Ventura S., Kmiecik Sebastian
20. CABS-dock standalone: a toolbox for flexible protein-peptide dockingBioinformatics, btz185, 2019Kurciński Mateusz, Ciemny M. P., Oleniecki T., Kuriata Aleksander, Badaczewska-Dawid A. E., Kolinski A., Kmiecik Sebastian
21. CABS-flex 2.0: a web server for fast simulations of flexibility of protein structuresNucleic Acids Res, 46: W338-W343, 2018Kuriata Aleksander, Gierut A. M., Oleniecki T., Ciemny Maciej, Kolinski A., Kurciński Mateusz, Kmiecik Sebastian
22. CABS-flex standalone: a simulation environment for fast modeling of protein flexibilityBioinformatics, 4: 694–695, 2018Kurciński Mateusz, Oleniecki T., Ciemny Maciej, Kuriata Aleksander, Kolinski A., Kmiecik Sebastian
23. Combining Structural Aggregation Propensity and Stability Predictions To Redesign Protein SolubilityMolecular Pharmaceutics, 15: 3846-3859, 2018Gil-Garcia Marcos, Bano-Polo Manuel, Varejao Nathalia, Jarnroz Michal, Kuriata Aleksander, Diaz-Caballero Marta, Lascorz Jara, More Bertrand, Navarro Susanna, Reverter David, Kmiecik Sebastian, Ventura Salvador